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  5. AMTR_s00004p00123910

AMTR_s00004p00123910 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00004.110

Description : Cytoskeleton.microtubular network.microtubule Tubulin heterodimer formation.gamma-Tubulin ring complex (gamma-TuRC).GCP6 component


Gene families : OG0005522 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005522_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00004p00123910

Target Alias Description ECC score Gene Family Method Actions
AT3G43610 No alias Spc97 / Spc98 family of spindle pole body (SBP) component 0.03 OrthoFinder output from all 47 species
Aev_g34467 No alias component *(GCP6) of gamma-Tubulin ring complex &... 0.02 OrthoFinder output from all 47 species
Aop_g08122 No alias component *(GCP6) of gamma-Tubulin ring complex &... 0.02 OrthoFinder output from all 47 species
LOC_Os04g47906.2 LOC_Os04g47906 component GCP6 of gamma-Tubulin ring complex (gamma-TuRC) 0.03 OrthoFinder output from all 47 species
LOC_Os04g47912.1 LOC_Os04g47912 component GCP6 of gamma-Tubulin ring complex (gamma-TuRC) 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s3208.g028642 No alias component *(GCP6) of gamma-Tubulin ring complex &... 0.04 OrthoFinder output from all 47 species
Sam_g36167 No alias component *(GCP6) of gamma-Tubulin ring complex &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEA Interproscan
CC GO:0000922 spindle pole IEA Interproscan
CC GO:0005815 microtubule organizing center IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016708 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of two atoms of oxygen into one donor IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
InterPro domains Description Start Stop
IPR007259 GCP 69 1193
No external refs found!