Aliases : evm_27.TU.AmTr_v1.0_scaffold00004.94
Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPP1 component
Gene families : OG0000349 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000349_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT1G01100 | No alias | 60S acidic ribosomal protein family | 0.1 | OrthoFinder output from all 47 species | |
AT4G00810 | No alias | 60S acidic ribosomal protein family | 0.13 | OrthoFinder output from all 47 species | |
AT5G47700 | No alias | 60S acidic ribosomal protein family | 0.11 | OrthoFinder output from all 47 species | |
Adi_g041465 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.05 | OrthoFinder output from all 47 species | |
Adi_g041466 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.05 | OrthoFinder output from all 47 species | |
Ala_g09775 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Ala_g32202 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
Als_g13340 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
Aob_g22325 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Aop_g10155 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
Aop_g22529 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.07 | OrthoFinder output from all 47 species | |
Aop_g29611 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
Aop_g31541 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Aop_g46228 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
Aop_g71102 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
Aspi01Gene08018.t1 | Aspi01Gene08018 | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Aspi01Gene20688.t1 | Aspi01Gene20688 | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.05 | OrthoFinder output from all 47 species | |
Azfi_s0001.g000668 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.11 | OrthoFinder output from all 47 species | |
Azfi_s0068.g036426 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.08 | OrthoFinder output from all 47 species | |
Cba_g54064 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.01G125200.1 | Ceric.01G125200 | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.07 | OrthoFinder output from all 47 species | |
Ceric.21G004600.1 | Ceric.21G004600 | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000342.4 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.03 | OrthoFinder output from all 47 species | |
Cre17.g738300 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.13 | OrthoFinder output from all 47 species | |
Dac_g08982 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.07 | OrthoFinder output from all 47 species | |
Dcu_g11087 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.08 | OrthoFinder output from all 47 species | |
Dcu_g26924 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g28301 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g44945 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Dde_g06728 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
Ehy_g19032 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01019679001 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.17 | OrthoFinder output from all 47 species | |
GSVIVT01027436001 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.06 | OrthoFinder output from all 47 species | |
GSVIVT01038637001 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.14 | OrthoFinder output from all 47 species | |
Gb_21696 | No alias | component RPP1 of LSU proteome component | 0.09 | OrthoFinder output from all 47 species | |
LOC_Os08g02340.1 | LOC_Os08g02340 | component RPP1 of LSU proteome component | 0.11 | OrthoFinder output from all 47 species | |
Len_g00084 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
Len_g01989 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
Lfl_g24779 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
MA_10430200g0010 | No alias | component RPP1 of LSU proteome component | 0.08 | OrthoFinder output from all 47 species | |
MA_90134g0010 | No alias | component RPP1 of LSU proteome component | 0.14 | OrthoFinder output from all 47 species | |
Mp6g11950.1 | No alias | component RPP1 of LSU proteome component | 0.11 | OrthoFinder output from all 47 species | |
Msp_g29772 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.07 | OrthoFinder output from all 47 species | |
Msp_g38999 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
Nbi_g13085 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
Nbi_g27328 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Pir_g33224 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
Pp3c1_36220V3.1 | Pp3c1_36220 | 60S acidic ribosomal protein family | 0.13 | OrthoFinder output from all 47 species | |
Pp3c20_2800V3.1 | Pp3c20_2800 | 60S acidic ribosomal protein family | 0.07 | OrthoFinder output from all 47 species | |
Pp3c23_18100V3.1 | Pp3c23_18100 | 60S acidic ribosomal protein family | 0.09 | OrthoFinder output from all 47 species | |
Pp3c8_22380V3.1 | Pp3c8_22380 | 60S acidic ribosomal protein family | 0.08 | OrthoFinder output from all 47 species | |
Ppi_g45546 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g13616 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g20755 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g32024 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g41870 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g47755 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
Smo133023 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.07 | OrthoFinder output from all 47 species | |
Solyc01g006160.3.1 | Solyc01g006160 | component RPP1 of LSU proteome component | 0.12 | OrthoFinder output from all 47 species | |
Solyc01g016470.3.1 | Solyc01g016470 | component RPP1 of LSU proteome component | 0.09 | OrthoFinder output from all 47 species | |
Solyc01g104370.4.1 | Solyc01g104370 | component RPP1 of LSU proteome component | 0.11 | OrthoFinder output from all 47 species | |
Spa_g03569 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.1 | OrthoFinder output from all 47 species | |
Spa_g30536 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Tin_g00286 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Tin_g02285 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
Tin_g33802 | No alias | component *(RPP1) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e021844_P001 | Zm00001e021844 | component RPP1 of LSU proteome component | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e029197_P001 | Zm00001e029197 | component RPP1 of LSU proteome component | 0.13 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
CC | GO:0005622 | intracellular anatomical structure | IEA | Interproscan |
CC | GO:0005840 | ribosome | IEA | Interproscan |
BP | GO:0006414 | translational elongation | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0006412 | translation | IEP | HCCA |
BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0019538 | protein metabolic process | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
BP | GO:0043603 | amide metabolic process | IEP | HCCA |
BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
BP | GO:0044238 | primary metabolic process | IEP | HCCA |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
No InterPro domains available for this sequence
No external refs found! |