AMTR_s00003p00263450 (NAF1, ATNAF1,...)

Aliases : NAF1, ATNAF1, evm_27.TU.AmTr_v1.0_scaffold00003.353

Description : RNA processing.RNA modification.pseudouridylation.H/ACA small nucleolar ribonucleoprotein (snoRNP) RNA pseudouridylation complex.Nhp2/Naf1 non-core component

Gene families : OG0004285 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004285_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00003p00263450

Target	Alias	Description	ECC score	Gene Family Method
Aev_g12784	NAF1, ATNAF1	non-core component *(NAF1) of H/ACA snoRNP RNA...	0.02	OrthoFinder output from all 47 species
Als_g21824	NAF1, ATNAF1	non-core component *(NAF1) of H/ACA snoRNP RNA...	0.03	OrthoFinder output from all 47 species
Azfi_s0185.g056625	NAF1, ATNAF1	non-core component *(NAF1) of H/ACA snoRNP RNA...	0.03	OrthoFinder output from all 47 species
Ceric.04G032200.1	NAF1, ATNAF1,...	non-core component *(NAF1) of H/ACA snoRNP RNA...	0.02	OrthoFinder output from all 47 species
Ceric.14G085100.1	NAF1, ATNAF1,...	non-core component *(NAF1) of H/ACA snoRNP RNA...	0.02	OrthoFinder output from all 47 species
Dde_g26558	NAF1, ATNAF1	non-core component *(NAF1) of H/ACA snoRNP RNA...	0.03	OrthoFinder output from all 47 species
Ehy_g21276	NAF1, ATNAF1	non-core component *(NAF1) of H/ACA snoRNP RNA...	0.02	OrthoFinder output from all 47 species
GSVIVT01030569001	NAF1, ATNAF1	RNA processing.RNA modification.pseudouridylation.H/ACA...	0.02	OrthoFinder output from all 47 species
Gb_27768	NAF1, ATNAF1	non-core component Nhp2/Naf1 of H/ACA small nucleolar...	0.02	OrthoFinder output from all 47 species
LOC_Os05g42300.1	NAF1, ATNAF1,...	non-core component Nhp2/Naf1 of H/ACA small nucleolar...	0.06	OrthoFinder output from all 47 species
Len_g08867	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_10092337g0010	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
MA_127987g0010	NAF1, ATNAF1	non-core component Nhp2/Naf1 of H/ACA small nucleolar...	0.02	OrthoFinder output from all 47 species
Mp8g14120.1	NAF1, ATNAF1	non-core component Nhp2/Naf1 of H/ACA small nucleolar...	0.02	OrthoFinder output from all 47 species
Msp_g36447	NAF1, ATNAF1	non-core component *(NAF1) of H/ACA snoRNP RNA...	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0084.g018279	NAF1, ATNAF1	non-core component *(NAF1) of H/ACA snoRNP RNA...	0.04	OrthoFinder output from all 47 species
Solyc07g054460.4.1	NAF1, ATNAF1,...	non-core component Nhp2/Naf1 of H/ACA small nucleolar...	0.04	OrthoFinder output from all 47 species
Spa_g09397	NAF1, ATNAF1	non-core component *(NAF1) of H/ACA snoRNP RNA...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016073	snRNA metabolic process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
MF	GO:0030515	snoRNA binding	IEA	Interproscan
BP	GO:0031120	snRNA pseudouridine synthesis	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0040031	snRNA modification	None	Extended
BP	GO:0042254	ribosome biogenesis	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007504	H/ACA_rnp_Gar1/Naf1	260	399

External Links

No external refs found!

AMTR_s00003p00263450 (NAF1, ATNAF1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation