AMTR_s00003p00257050 (MCM3,...)

Aliases : MCM3, evm_27.TU.AmTr_v1.0_scaffold00003.319

Description : Cell cycle.interphase.DNA replication.preinitiation.MCM replicative DNA helicase complex.MCM3 component

Gene families : OG0007520 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007520_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00003p00257050
Cluster	HCCA: Cluster_100

Target	Alias	Description	ECC score	Gene Family Method
AT5G46280	MCM3	Minichromosome maintenance (MCM2/3/5) family protein	0.05	OrthoFinder output from all 47 species
Ala_g23792	MCM3	component *(MCM3) of MCM replicative DNA helicase...	0.11	OrthoFinder output from all 47 species
Als_g15677	MCM3	component *(MCM3) of MCM replicative DNA helicase...	0.07	OrthoFinder output from all 47 species
Aop_g08357	MCM3	component *(MCM3) of MCM replicative DNA helicase...	0.1	OrthoFinder output from all 47 species
Aspi01Gene37397.t1	MCM3, Aspi01Gene37397	component *(MCM3) of MCM replicative DNA helicase...	0.06	OrthoFinder output from all 47 species
Aspi01Gene37397.t2	MCM3, Aspi01Gene37397	component *(MCM3) of MCM replicative DNA helicase...	0.12	OrthoFinder output from all 47 species
Azfi_s0003.g007570	MCM3	component *(MCM3) of MCM replicative DNA helicase...	0.08	OrthoFinder output from all 47 species
Cba_g12060	MCM3	component *(MCM3) of MCM replicative DNA helicase...	0.04	OrthoFinder output from all 47 species
Ceric.33G060500.1	MCM3, Ceric.33G060500	component *(MCM3) of MCM replicative DNA helicase...	0.18	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021352.40	MCM3	DNA replication licensing factor MCM3 OS=Oryza sativa...	0.01	OrthoFinder output from all 47 species
Cre06.g295700	MCM3	Cell cycle.interphase.DNA replication.preinitiation.MCM...	0.07	OrthoFinder output from all 47 species
Dac_g11573	MCM3	component *(MCM3) of MCM replicative DNA helicase...	0.1	OrthoFinder output from all 47 species
Dcu_g04031	MCM3	component *(MCM3) of MCM replicative DNA helicase...	0.16	OrthoFinder output from all 47 species
Ehy_g11651	MCM3	component *(MCM3) of MCM replicative DNA helicase...	0.02	OrthoFinder output from all 47 species
GSVIVT01021426001	MCM3	Cell cycle.interphase.DNA replication.preinitiation.MCM...	0.2	OrthoFinder output from all 47 species
Gb_01563	MCM3	component MCM3 of MCM replicative DNA helicase complex	0.11	OrthoFinder output from all 47 species
LOC_Os05g39850.1	MCM3, LOC_Os05g39850	component MCM3 of MCM replicative DNA helicase complex	0.1	OrthoFinder output from all 47 species
Len_g00730	MCM3	component *(MCM3) of MCM replicative DNA helicase...	0.11	OrthoFinder output from all 47 species
Lfl_g27704	MCM3	component *(MCM3) of MCM replicative DNA helicase...	0.1	OrthoFinder output from all 47 species
MA_138102g0010	MCM3	component MCM3 of MCM replicative DNA helicase complex	0.11	OrthoFinder output from all 47 species
MA_163650g0010	MCM3	component MCM3 of MCM replicative DNA helicase complex	0.16	OrthoFinder output from all 47 species
Mp1g17650.1	MCM3	component MCM3 of MCM replicative DNA helicase complex	0.15	OrthoFinder output from all 47 species
Msp_g08861	MCM3	component *(MCM3) of MCM replicative DNA helicase...	0.09	OrthoFinder output from all 47 species
Nbi_g12401	MCM3	not classified & original description: none	0.12	OrthoFinder output from all 47 species
Ppi_g45821	MCM3	component *(MCM3) of MCM replicative DNA helicase...	0.08	OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015488	MCM3	component *(MCM3) of MCM replicative DNA helicase...	0.09	OrthoFinder output from all 47 species
Sam_g16296	No alias	component *(MCM3) of MCM replicative DNA helicase...	0.06	OrthoFinder output from all 47 species
Smo90198	MCM3	Cell cycle.interphase.DNA replication.preinitiation.MCM...	0.05	OrthoFinder output from all 47 species
Solyc02g070780.4.1	MCM3, Solyc02g070780	component MCM3 of MCM replicative DNA helicase complex	0.16	OrthoFinder output from all 47 species
Spa_g08773	MCM3	component *(MCM3) of MCM replicative DNA helicase...	0.1	OrthoFinder output from all 47 species
Tin_g10027	MCM3	component *(MCM3) of MCM replicative DNA helicase...	0.08	OrthoFinder output from all 47 species
Zm00001e027296_P001	MCM3, Zm00001e027296	component MCM3 of MCM replicative DNA helicase complex	0.02	OrthoFinder output from all 47 species
Zm00001e031913_P001	MCM3, Zm00001e031913	component MCM3 of MCM replicative DNA helicase complex	0.13	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	HCCA
BP	GO:0000725	recombinational repair	IEP	HCCA
MF	GO:0001882	nucleoside binding	IEP	HCCA
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006270	DNA replication initiation	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006302	double-strand break repair	IEP	HCCA
BP	GO:0006304	DNA modification	IEP	HCCA
BP	GO:0006305	DNA alkylation	IEP	HCCA
BP	GO:0006306	DNA methylation	IEP	HCCA
BP	GO:0006310	DNA recombination	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0007018	microtubule-based movement	IEP	HCCA
BP	GO:0007090	obsolete regulation of S phase of mitotic cell cycle	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
CC	GO:0042555	MCM complex	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0044728	DNA methylation or demethylation	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001208	MCM_dom	278	642

External Links

No external refs found!

AMTR_s00003p00257050 (MCM3,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation