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  5. AMTR_s00003p00195190

AMTR_s00003p00195190 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00003.176

Description : RNA biosynthesis.transcriptional activation.DBP transcription factor


Gene families : OG0000632 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000632_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00003p00195190
Cluster HCCA: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
AT3G62260 No alias Protein phosphatase 2C family protein 0.06 OrthoFinder output from all 47 species
Adi_g004494 AtDBP1, DBP1 clade G phosphatase *(DBP) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g019085 No alias clade G phosphatase *(DBP) & original description: none 0.06 OrthoFinder output from all 47 species
Adi_g023836 No alias clade G phosphatase *(DBP) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g057511 No alias clade G phosphatase *(DBP) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g065482 AtDBP1, DBP1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g066815 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g23758 AtDBP1, DBP1 clade G phosphatase *(DBP) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g26423 No alias clade G phosphatase *(DBP) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g23337 AtDBP1, DBP1 clade G phosphatase *(DBP) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g51622 No alias clade G phosphatase *(DBP) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g16830 No alias clade G phosphatase *(DBP) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g07787 No alias clade G phosphatase *(DBP) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08629 No alias clade G phosphatase *(DBP) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene05677.t1 AtDBP1, DBP1,... clade G phosphatase *(DBP) & original description: none 0.08 OrthoFinder output from all 47 species
Aspi01Gene52973.t1 AtDBP1, DBP1,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene52974.t1 AtDBP1, DBP1,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0058.g034465 AtDBP1, DBP1 clade G phosphatase *(DBP) & original description: CDS=137-1420 0.02 OrthoFinder output from all 47 species
Azfi_s3252.g115111 No alias clade G phosphatase *(DBP) & original description: CDS=374-1630 0.04 OrthoFinder output from all 47 species
Cba_g02559 AtDBP1, DBP1 clade G phosphatase *(DBP) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G058200.1 Ceric.04G058200 clade G phosphatase *(DBP) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.09G079600.1 AtDBP1, DBP1,... clade G phosphatase *(DBP) & original description:... 0.06 OrthoFinder output from all 47 species
Dcu_g19762 No alias clade G phosphatase *(DBP) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g09598 No alias clade G phosphatase *(DBP) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21633 No alias clade G phosphatase *(DBP) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01028192001 No alias RNA biosynthesis.transcriptional activation.DBP... 0.09 OrthoFinder output from all 47 species
Gb_16142 No alias transcription factor (DBP). clade G phosphatase 0.06 OrthoFinder output from all 47 species
LOC_Os01g19130.1 LOC_Os01g19130 transcription factor (DBP) 0.04 OrthoFinder output from all 47 species
Len_g08148 AtDBP1, DBP1 clade G phosphatase *(DBP) & original description: none 0.08 OrthoFinder output from all 47 species
Len_g55507 No alias clade G phosphatase *(DBP) & original description: none 0.04 OrthoFinder output from all 47 species
MA_16483g0010 No alias transcription factor (DBP) 0.09 OrthoFinder output from all 47 species
MA_18328g0020 AtDBP1, DBP1 transcription factor (DBP) 0.02 OrthoFinder output from all 47 species
MA_185497g0010 No alias transcription factor (DBP). clade G phosphatase 0.04 OrthoFinder output from all 47 species
Msp_g19202 No alias clade G phosphatase *(DBP) & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g00814 No alias clade G phosphatase *(DBP) & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g09163 No alias clade G phosphatase *(DBP) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g45038 No alias clade G phosphatase *(DBP) & original description: none 0.06 OrthoFinder output from all 47 species
Solyc01g068000.4.1 Solyc01g068000 transcription factor (DBP) 0.07 OrthoFinder output from all 47 species
Solyc05g053290.3.1 Solyc05g053290 transcription factor (DBP) 0.03 OrthoFinder output from all 47 species
Solyc06g009390.3.1 Solyc06g009390 transcription factor (DBP) 0.02 OrthoFinder output from all 47 species
Solyc07g007220.3.1 AtDBP1, DBP1,... transcription factor (DBP) 0.03 OrthoFinder output from all 47 species
Spa_g22865 AtDBP1, DBP1 clade G phosphatase *(DBP) & original description: none 0.09 OrthoFinder output from all 47 species
Spa_g24550 AtDBP1, DBP1 clade G phosphatase *(DBP) & original description: none 0.09 OrthoFinder output from all 47 species
Spa_g46551 AtDBP1, DBP1 clade G phosphatase *(DBP) & original description: none 0.08 OrthoFinder output from all 47 species
Spa_g54548 No alias clade G phosphatase *(DBP) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g57303 AtDBP1, DBP1 clade G phosphatase *(DBP) & original description: none 0.09 OrthoFinder output from all 47 species
Tin_g27710 No alias clade G phosphatase *(DBP) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e025432_P001 Zm00001e025432 transcription factor (DBP) 0.04 OrthoFinder output from all 47 species
Zm00001e040337_P001 Zm00001e040337 transcription factor (DBP) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016597 amino acid binding IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0043177 organic acid binding IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
InterPro domains Description Start Stop
IPR001932 PPM-type_phosphatase-like_dom 99 353
No external refs found!