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  5. AMTR_s00003p00166290

AMTR_s00003p00166290 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00003.141

Description : Pentatricopeptide repeat-containing protein At4g38150 OS=Arabidopsis thaliana


Gene families : OG0012203 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0012203_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: AMTR_s00003p00166290

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01023844001 No alias Pentatricopeptide repeat-containing protein At4g38150... 0.03 OrthoFinder output from all 47 species
Gb_26477 No alias Pentatricopeptide repeat-containing protein At4g38150... 0.08 OrthoFinder output from all 47 species
Gb_29332 No alias Pentatricopeptide repeat-containing protein At4g38150... 0.02 OrthoFinder output from all 47 species
LOC_Os06g20354.1 LOC_Os06g20354 Pentatricopeptide repeat-containing protein At4g38150... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003954 NADH dehydrogenase activity IEP HCCA
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP HCCA
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 192 240
IPR002885 Pentatricopeptide_repeat 258 291
IPR002885 Pentatricopeptide_repeat 165 189
No external refs found!