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  5. AMTR_s00003p00144740

AMTR_s00003p00144740 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00003.116

No description available


Gene families : OG0005121 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005121_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00003p00144740

Target Alias Description ECC score Gene Family Method Actions
AT5G11240 No alias transducin family protein / WD-40 repeat family protein 0.05 OrthoFinder output from all 47 species
Adi_g017295 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g13801 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g40498 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0028.g024031 No alias not classified & original description: CDS=168-2150 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000123.23 No alias No description available 0.03 OrthoFinder output from all 47 species
Cre12.g538500 No alias No description available 0.07 OrthoFinder output from all 47 species
GSVIVT01017246001 No alias No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01035079001 No alias No description available 0.04 OrthoFinder output from all 47 species
LOC_Os03g18840.1 LOC_Os03g18840 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_10435957g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ore_g17083 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c7_70V3.1 Pp3c7_70 transducin family protein / WD-40 repeat family protein 0.01 OrthoFinder output from all 47 species
Smo404454 No alias No description available 0.02 OrthoFinder output from all 47 species
Solyc03g116380.4.1 Solyc03g116380 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Zm00001e001372_P001 Zm00001e001372 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEP HCCA
CC GO:0005694 chromosome IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
MF GO:0009029 tetraacyldisaccharide 4'-kinase activity IEP HCCA
BP GO:0009245 lipid A biosynthetic process IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046467 membrane lipid biosynthetic process IEP HCCA
BP GO:0046493 lipid A metabolic process IEP HCCA
BP GO:1901269 lipooligosaccharide metabolic process IEP HCCA
BP GO:1901271 lipooligosaccharide biosynthetic process IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR007148 SSU_processome_Utp12 493 587
IPR001680 WD40_repeat 146 174
IPR001680 WD40_repeat 186 223
IPR001680 WD40_repeat 12 33
No external refs found!