1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00003p00048580

AMTR_s00003p00048580 (HCF107,...)


Aliases : HCF107, evm_27.TU.AmTr_v1.0_scaffold00003.29

Description : RNA processing.organelle machineries.RNA splicing.plastidial RNA splicing.HCF107 transcript stability factor


Gene families : OG0005071 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005071_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00003p00048580
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
LOC_Os03g19560.1 HCF107, LOC_Os03g19560 plastidial RNA transcript stability factor 0.03 OrthoFinder output from all 47 species
Mp5g00100.1 HCF107 plastidial RNA transcript stability factor 0.02 OrthoFinder output from all 47 species
Ppi_g05265 HCF107 plastidial transcript stability factor *(HCF107) &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
InterPro domains Description Start Stop
IPR013105 TPR_2 454 482
No external refs found!