1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00003p00032960

AMTR_s00003p00032960 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00003.16

Description : Lipid metabolism.fatty acid synthesis.acetyl-CoA generation.plastidial pyruvate dehydrogenase complex.E3 dihydrolipoamide dehydrogenase component


Gene families : OG0003412 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003412_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00003p00032960
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
AT3G16950 LPD1, ptlpd1 lipoamide dehydrogenase 1 0.14 OrthoFinder output from all 47 species
AT4G16155 No alias dihydrolipoyl dehydrogenases 0.14 OrthoFinder output from all 47 species
Aop_g04556 No alias dihydrolipoamide dehydrogenase component of plastidial... 0.02 OrthoFinder output from all 47 species
Ceric.32G036400.1 Ceric.32G036400 not classified & original description: pacid=50598420... 0.08 OrthoFinder output from all 47 species
Ceric.32G036500.1 LPD1, ptlpd1,... not classified & original description: pacid=50598665... 0.15 OrthoFinder output from all 47 species
Cre01.g016514 No alias Lipid metabolism.fatty acid synthesis.acetyl-CoA... 0.05 OrthoFinder output from all 47 species
Dac_g11484 No alias dihydrolipoamide dehydrogenase component of plastidial... 0.03 OrthoFinder output from all 47 species
Dcu_g01402 No alias dihydrolipoamide dehydrogenase component of plastidial... 0.05 OrthoFinder output from all 47 species
Dde_g26291 LPD1, ptlpd1 dihydrolipoamide dehydrogenase component of plastidial... 0.06 OrthoFinder output from all 47 species
GSVIVT01035022001 No alias Lipid metabolism.fatty acid synthesis.acetyl-CoA... 0.1 OrthoFinder output from all 47 species
Gb_37746 No alias dihydrolipoamide dehydrogenase component E3 of... 0.05 OrthoFinder output from all 47 species
LOC_Os01g23610.1 LPD1, ptlpd1,... dihydrolipoamide dehydrogenase component E3 of... 0.07 OrthoFinder output from all 47 species
LOC_Os05g06460.1 LPD1, ptlpd1,... dihydrolipoamide dehydrogenase component E3 of... 0.08 OrthoFinder output from all 47 species
Len_g20988 No alias dihydrolipoamide dehydrogenase component of plastidial... 0.03 OrthoFinder output from all 47 species
Mp5g08370.1 No alias dihydrolipoamide dehydrogenase component E3 of... 0.07 OrthoFinder output from all 47 species
Nbi_g11488 No alias dihydrolipoamide dehydrogenase component of plastidial... 0.03 OrthoFinder output from all 47 species
Ore_g43899 No alias dihydrolipoamide dehydrogenase component of plastidial... 0.03 OrthoFinder output from all 47 species
Solyc01g100360.4.1 Solyc01g100360 dihydrolipoamide dehydrogenase component E3 of... 0.09 OrthoFinder output from all 47 species
Spa_g12508 LPD1, ptlpd1 dihydrolipoamide dehydrogenase component of plastidial... 0.03 OrthoFinder output from all 47 species
Spa_g54453 LPD1, ptlpd1 dihydrolipoamide dehydrogenase component of plastidial... 0.03 OrthoFinder output from all 47 species
Zm00001e026265_P002 LPD1, ptlpd1,... dihydrolipoamide dehydrogenase component E3 of... 0.07 OrthoFinder output from all 47 species
Zm00001e026698_P002 LPD1, ptlpd1,... dihydrolipoamide dehydrogenase component E3 of... 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IEA Interproscan
MF GO:0016491 oxidoreductase activity IEA Interproscan
BP GO:0045454 cell redox homeostasis IEA Interproscan
MF GO:0050660 flavin adenine dinucleotide binding IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006098 pentose-phosphate shunt IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0006739 NADP metabolic process IEP HCCA
BP GO:0006740 NADPH regeneration IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0016790 thiolester hydrolase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0019362 pyridine nucleotide metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046496 nicotinamide nucleotide metabolic process IEP HCCA
BP GO:0051156 glucose 6-phosphate metabolic process IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072524 pyridine-containing compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR023753 FAD/NAD-binding_dom 74 395
IPR004099 Pyr_nucl-diS_OxRdtase_dimer 427 538
No external refs found!