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  5. AMTR_s00002p00272130

AMTR_s00002p00272130 (CDC73, PHP,...)


Aliases : CDC73, PHP, evm_27.TU.AmTr_v1.0_scaffold00002.665

Description : RNA biosynthesis.RNA polymerase II-dependent transcription.PAF1C transcription initiation and elongation complex.CDC73/PHP component


Gene families : OG0005658 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005658_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00272130

Target Alias Description ECC score Gene Family Method Actions
Aev_g05238 CDC73, PHP component *(CDC73/PHP) of PAF1C transcription initiation... 0.03 OrthoFinder output from all 47 species
Ceric.14G052600.1 CDC73, PHP,... component *(CDC73/PHP) of PAF1C transcription initiation... 0.04 OrthoFinder output from all 47 species
Len_g47769 CDC73, PHP component *(CDC73/PHP) of PAF1C transcription initiation... 0.02 OrthoFinder output from all 47 species
MA_6793g0020 CDC73, PHP component CDC73/PHP of PAF1C transcription initiation... 0.02 OrthoFinder output from all 47 species
Nbi_g02024 CDC73, PHP component *(CDC73/PHP) of PAF1C transcription initiation... 0.02 OrthoFinder output from all 47 species
Ore_g40644 CDC73, PHP component *(CDC73/PHP) of PAF1C transcription initiation... 0.03 OrthoFinder output from all 47 species
Sam_g27221 No alias component *(CDC73/PHP) of PAF1C transcription initiation... 0.02 OrthoFinder output from all 47 species
Spa_g08839 CDC73, PHP component *(CDC73/PHP) of PAF1C transcription initiation... 0.03 OrthoFinder output from all 47 species
Zm00001e012326_P001 CDC73, PHP,... component CDC73/PHP of PAF1C transcription initiation... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004334 fumarylacetoacetase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
MF GO:0016822 hydrolase activity, acting on acid carbon-carbon bonds IEP HCCA
MF GO:0016823 hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0046903 secretion IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140352 export from cell IEP HCCA
InterPro domains Description Start Stop
IPR007852 Cdc73/Parafibromin 277 460
No external refs found!