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  5. AMTR_s00002p00271910

AMTR_s00002p00271910 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.647

Description : Pentatricopeptide repeat-containing protein At3g22670, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00271910

Target Alias Description ECC score Gene Family Method Actions
AT1G77360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 OrthoFinder output from all 47 species
Adi_g057762 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g37839 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g04707 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g06272 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g116540.1.1 Solyc03g116540 Pentatricopeptide repeat-containing protein At1g52640,... 0.04 OrthoFinder output from all 47 species
Solyc04g081950.4.1 Solyc04g081950 Pentatricopeptide repeat-containing protein At1g20300,... 0.03 OrthoFinder output from all 47 species
Zm00001e015994_P001 Zm00001e015994 Pentatricopeptide repeat-containing protein At2g13420,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 307 355
IPR002885 Pentatricopeptide_repeat 416 461
IPR002885 Pentatricopeptide_repeat 238 286
IPR002885 Pentatricopeptide_repeat 374 406
IPR002885 Pentatricopeptide_repeat 479 511
IPR002885 Pentatricopeptide_repeat 170 200
No external refs found!