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  5. AMTR_s00002p00270110

AMTR_s00002p00270110 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.570

Description : Stem-specific protein TSJT1 OS=Nicotiana tabacum


Gene families : OG0000573 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000573_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00270110

Target Alias Description ECC score Gene Family Method Actions
Aev_g06442 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cre10.g441750 No alias No description available 0.02 OrthoFinder output from all 47 species
Gb_00539 No alias Stem-specific protein TSJT1 OS=Nicotiana tabacum... 0.03 OrthoFinder output from all 47 species
MA_12061g0010 No alias Stem-specific protein TSJT1 OS=Nicotiana tabacum... 0.03 OrthoFinder output from all 47 species
Zm00001e005643_P001 Zm00001e005643 Stem-specific protein TSJT1 OS=Nicotiana tabacum... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005048 signal sequence binding IEP HCCA
BP GO:0006621 protein retention in ER lumen IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
BP GO:0032507 maintenance of protein location in cell IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP HCCA
MF GO:0042277 peptide binding IEP HCCA
BP GO:0045185 maintenance of protein location IEP HCCA
MF GO:0046923 ER retention sequence binding IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
BP GO:0051651 maintenance of location in cell IEP HCCA
BP GO:0072595 maintenance of protein localization in organelle IEP HCCA
InterPro domains Description Start Stop
IPR024286 DUF3700 2 226
No external refs found!