LOC_Os09g23730.1


Description : HMG-Y-related protein A OS=Zea mays (sp|q9fys5|hmgya_maize : 93.6)


Gene families : OG_01_0008923 (Archaeplastida) Phylogenetic Tree(s): OG_01_0008923_tree ,
OG_02_0008640 (LandPlants) Phylogenetic Tree(s): OG_02_0008640_tree ,
OG_03_0005615 (SeedPlants) Phylogenetic Tree(s): OG_03_0005615_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os09g23730.1
Cluster HCCA: Cluster_239

Target Alias Description ECC score Gene Family Method Actions
AT1G14900 HMGA high mobility group A 0.03 Archaeplastida
GSVIVT01008411001 No alias No description available 0.03 Archaeplastida
Solyc04g007890.3.1 No alias HMG-Y-related protein A OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc05g051290.4.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e004163_P001 No alias HMG-Y-related protein A OS=Zea mays... 0.06 Archaeplastida
Zm00001e022431_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
AT1G14900 HMGA high mobility group A 0.02 LandPlants
GSVIVT01008411001 No alias No description available 0.03 LandPlants
Solyc04g007890.3.1 No alias HMG-Y-related protein A OS=Arabidopsis thaliana... 0.03 LandPlants
Solyc05g051290.4.1 No alias no hits & (original description: none) 0.03 LandPlants
Zm00001e004163_P001 No alias HMG-Y-related protein A OS=Zea mays... 0.05 LandPlants
Zm00001e022431_P001 No alias no hits & (original description: none) 0.03 LandPlants
GSVIVT01008411001 No alias No description available 0.03 SeedPlants
Solyc04g007890.3.1 No alias HMG-Y-related protein A OS=Arabidopsis thaliana... 0.03 SeedPlants
Solyc05g051290.4.1 No alias no hits & (original description: none) 0.03 SeedPlants
Zm00001e004163_P001 No alias HMG-Y-related protein A OS=Zea mays... 0.05 SeedPlants

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006334 nucleosome assembly IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 23 84
No external refs found!