Aliases : SPT5L, KTF1, evm_27.TU.AmTr_v1.0_scaffold00002.356
Description : Chromatin organisation.DNA methylation.canonical RNA-directed DNA methylation pathway.KTF1/SPT5L auxilary silencing factor
Gene families : OG0002736 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002736_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AMTR_s00002p00251130 | |
Cluster | HCCA: Cluster_44 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT4G08350 | GTA02, GTA2 | global transcription factor group A2 | 0.03 | OrthoFinder output from all 47 species | |
Ehy_g18831 | GTA02, GTA2 | component *(SPT5) of SPT4/5 transcription elongation... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os05g43060.1 | SPT5L, KTF1,... | RNA polymerase-V auxiliary factor (KTF1/SPT5L) | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os06g10620.1 | GTA02, GTA2,... | component SPT5 of SPT4/5 transcription elongation factor complex | 0.05 | OrthoFinder output from all 47 species | |
Ppi_g52300 | GTA02, GTA2 | component *(SPT5) of SPT4/5 transcription elongation... | 0.03 | OrthoFinder output from all 47 species | |
Solyc04g064700.4.1 | GTA02, GTA2,... | component SPT5 of SPT4/5 transcription elongation factor complex | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e032078_P001 | SPT5L, KTF1,... | RNA polymerase-V auxiliary factor (KTF1/SPT5L) | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e036210_P001 | GTA02, GTA2,... | component SPT5 of SPT4/5 transcription elongation factor complex | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
CC | GO:0005622 | intracellular anatomical structure | IEP | HCCA |
CC | GO:0005643 | nuclear pore | IEP | HCCA |
MF | GO:0008270 | zinc ion binding | IEP | HCCA |
MF | GO:0016859 | cis-trans isomerase activity | IEP | HCCA |
MF | GO:0017056 | structural constituent of nuclear pore | IEP | HCCA |
MF | GO:0043169 | cation binding | IEP | HCCA |
MF | GO:0046872 | metal ion binding | IEP | HCCA |
MF | GO:0046914 | transition metal ion binding | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR005100 | NGN-domain | 158 | 241 |
No external refs found! |