AMTR_s00002p00251130 (SPT5L, KTF1,...)


Aliases : SPT5L, KTF1, evm_27.TU.AmTr_v1.0_scaffold00002.356

Description : Chromatin organisation.DNA methylation.canonical RNA-directed DNA methylation pathway.KTF1/SPT5L auxilary silencing factor


Gene families : OG0002736 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002736_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00251130
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
AT4G08350 GTA02, GTA2 global transcription factor group A2 0.03 OrthoFinder output from all 47 species
Ehy_g18831 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.02 OrthoFinder output from all 47 species
LOC_Os05g43060.1 SPT5L, KTF1,... RNA polymerase-V auxiliary factor (KTF1/SPT5L) 0.03 OrthoFinder output from all 47 species
LOC_Os06g10620.1 GTA02, GTA2,... component SPT5 of SPT4/5 transcription elongation factor complex 0.05 OrthoFinder output from all 47 species
Ppi_g52300 GTA02, GTA2 component *(SPT5) of SPT4/5 transcription elongation... 0.03 OrthoFinder output from all 47 species
Solyc04g064700.4.1 GTA02, GTA2,... component SPT5 of SPT4/5 transcription elongation factor complex 0.04 OrthoFinder output from all 47 species
Zm00001e032078_P001 SPT5L, KTF1,... RNA polymerase-V auxiliary factor (KTF1/SPT5L) 0.02 OrthoFinder output from all 47 species
Zm00001e036210_P001 GTA02, GTA2,... component SPT5 of SPT4/5 transcription elongation factor complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR005100 NGN-domain 158 241
No external refs found!