1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00002p00244930

AMTR_s00002p00244930 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.326

Description : RNA processing.RNA modification.rRNA/tRNA methylation.DIM1B-type rRNA adenosine dimethylase


Gene families : OG0002989 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002989_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00244930

Target Alias Description ECC score Gene Family Method Actions
Als_g63583 No alias rRNA adenosine dimethylase *(DIM1A) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g14471 No alias rRNA adenosine dimethylase *(DIM1A) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g18932 No alias rRNA adenosine dimethylase *(DIM1A) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g16134 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_34275 No alias rRNA adenosine dimethylase (DIM1A) 0.02 OrthoFinder output from all 47 species
LOC_Os07g32550.1 LOC_Os07g32550 rRNA adenosine dimethylase (DIM1B) 0.04 OrthoFinder output from all 47 species
MA_10429808g0010 No alias Ribosomal RNA small subunit methyltransferase... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0112.g020803 No alias rRNA adenosine dimethylase *(DIM1A) & original... 0.02 OrthoFinder output from all 47 species
Smo116036 No alias RNA processing.RNA modification.rRNA/tRNA... 0.02 OrthoFinder output from all 47 species
Tin_g06535 No alias rRNA adenosine dimethylase *(DIM1A) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e013790_P001 Zm00001e013790 rRNA adenosine dimethylase (DIM1A) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEA Interproscan
MF GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity IEA Interproscan
MF GO:0008649 rRNA methyltransferase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR001737 KsgA/Erm 58 276
No external refs found!