AMTR_s00002p00240660 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.300

No description available

Gene families : OG0005430 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005430_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00002p00240660

Target	Alias	Description	ECC score	Gene Family Method
AT3G28460	No alias	methyltransferases	0.03	OrthoFinder output from all 47 species
Ala_g13790	No alias	RsmD-type rRNA methyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.26G002400.1	Ceric.26G002400	RsmD-type rRNA methyltransferase & original description:...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000269.115	No alias	No description available	0.01	OrthoFinder output from all 47 species
Dcu_g14054	No alias	RsmD-type rRNA methyltransferase & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g29421	No alias	RsmD-type rRNA methyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os03g52640.2	LOC_Os03g52640	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Len_g11092	No alias	RsmD-type rRNA methyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g01027	No alias	RsmD-type rRNA methyltransferase & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g00725	No alias	RsmD-type rRNA methyltransferase & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g10432	No alias	RsmD-type rRNA methyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g10244	No alias	RsmD-type rRNA methyltransferase & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g18752	No alias	RsmD-type rRNA methyltransferase & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g19713	No alias	RsmD-type rRNA methyltransferase & original description: none	0.04	OrthoFinder output from all 47 species
Solyc02g067540.3.1	Solyc02g067540	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000154	rRNA modification	None	Extended
BP	GO:0001510	RNA methylation	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	IEA	Interproscan
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0031167	rRNA methylation	IEA	Interproscan
BP	GO:0032259	methylation	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004221	obsolete ubiquitin thiolesterase activity	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004527	exonuclease activity	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
MF	GO:0008409	5'-3' exonuclease activity	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004398	RNA_MeTrfase_RsmD	108	296

External Links

No external refs found!

AMTR_s00002p00240660 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation