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  5. AMTR_s00002p00165660

AMTR_s00002p00165660 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.139

Description : RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase regulatory protein


Gene families : OG0002071 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002071_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00165660
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
AT5G10350 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
Adi_g115433 No alias regulatory protein of poly(A) RNA polymerase activity &... 0.03 OrthoFinder output from all 47 species
Als_g47790 No alias regulatory protein of poly(A) RNA polymerase activity &... 0.03 OrthoFinder output from all 47 species
Aob_g00829 No alias regulatory protein of poly(A) RNA polymerase activity &... 0.03 OrthoFinder output from all 47 species
Azfi_s0127.g048679 No alias regulatory protein of poly(A) RNA polymerase activity &... 0.03 OrthoFinder output from all 47 species
Cba_g24615 No alias regulatory protein of poly(A) RNA polymerase activity &... 0.02 OrthoFinder output from all 47 species
Ceric.01G040200.1 Ceric.01G040200 regulatory protein of poly(A) RNA polymerase activity &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001628.7 ATPABN1, PABN1 RNA processing.RNA 3-end polyadenylation.poly(A) RNA... 0.05 OrthoFinder output from all 47 species
Cre06.g274500 ATPABN1, PABN1 RNA processing.RNA 3-end polyadenylation.poly(A) RNA... 0.02 OrthoFinder output from all 47 species
Dac_g21273 No alias regulatory protein of poly(A) RNA polymerase activity &... 0.02 OrthoFinder output from all 47 species
Len_g01008 No alias regulatory protein of poly(A) RNA polymerase activity &... 0.02 OrthoFinder output from all 47 species
Mp8g03090.1 No alias poly(A) RNA polymerase regulatory protein 0.02 OrthoFinder output from all 47 species
Sam_g11414 No alias regulatory protein of poly(A) RNA polymerase activity &... 0.02 OrthoFinder output from all 47 species
Spa_g07876 No alias regulatory protein of poly(A) RNA polymerase activity &... 0.02 OrthoFinder output from all 47 species
Zm00001e015900_P004 Zm00001e015900 poly(A) RNA polymerase regulatory protein 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 95 163
No external refs found!