AMTR_s00002p00134180 (RAB6A, ATRABH1B,...)

Aliases : RAB6A, ATRABH1B, ATRAB6A, RAB6, evm_27.TU.AmTr_v1.0_scaffold00002.95

Description : Vesicle trafficking.regulation of membrane tethering and fusion.RAB-GTPase activities.H-class RAB GTPase

Gene families : OG0001773 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001773_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00002p00134180

Target	Alias	Description	ECC score	Gene Family Method
Cba_g24911	AtRABH1e, RABH1e	H-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g13691	AtRABH1e, RABH1e	H-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
LOC_Os03g09140.1	AtRABH1e,...	H-class RAB GTPase	0.03	OrthoFinder output from all 47 species
Nbi_g21059	AtRABH1e, RABH1e	H-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g05988	AtRABH1e, RABH1e	H-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g17454	AtRABH1e, RABH1e	H-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007264	small GTPase mediated signal transduction	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
BP	GO:0035556	intracellular signal transduction	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005509	calcium ion binding	IEP	HCCA
MF	GO:0008430	selenium binding	IEP	HCCA
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	HCCA
MF	GO:0016881	acid-amino acid ligase activity	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	11	169

External Links

No external refs found!