1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00001p00223800

AMTR_s00001p00223800 (SHI,...)


Aliases : SHI, evm_27.TU.AmTr_v1.0_scaffold00001.233

Description : RNA biosynthesis.transcriptional activation.SRS transcription factor


Gene families : OG0001235 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001235_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00001p00223800
Cluster HCCA: Cluster_119

Target Alias Description ECC score Gene Family Method Actions
AT2G18120 SRS4 SHI-related sequence 4 0.05 OrthoFinder output from all 47 species
Aev_g16410 LRP1 SRS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g35595 SRS1, STY1 SRS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g46734 SRS7 SRS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g26536 SHI SRS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene36810.t1 SHI, Aspi01Gene36810 SRS-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene65745.t1 SHI, Aspi01Gene65745 SRS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.25G035200.1 SRS1, STY1,... SRS-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Ehy_g02264 SHI SRS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06073 SHI SRS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g09814 SHI SRS-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g21838 SRS1, STY1 SRS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g14706 SHI SRS-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g084680.3.1 SRS1, STY1,... transcription factor (SRS) 0.04 OrthoFinder output from all 47 species
Solyc10g054070.1.1 SRS5, Solyc10g054070 transcription factor (SRS) 0.05 OrthoFinder output from all 47 species
Solyc11g064800.3.1 LRP1, Solyc11g064800 transcription factor (SRS) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016706 2-oxoglutarate-dependent dioxygenase activity IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
InterPro domains Description Start Stop
IPR007818 SHI 91 152
IPR007818 SHI 20 95
No external refs found!