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  5. AMTR_s00001p00203780

AMTR_s00001p00203780 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00001.205

Description : Putative pentatricopeptide repeat-containing protein At1g09680 OS=Arabidopsis thaliana


Gene families : OG0002597 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002597_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00001p00203780
Cluster HCCA: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00111980 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g09820... 0.03 OrthoFinder output from all 47 species
Solyc01g108410.3.1 EMB2745, Solyc01g108410 Pentatricopeptide repeat-containing protein At5g39710... 0.03 OrthoFinder output from all 47 species
Solyc03g007390.4.1 Solyc03g007390 Pentatricopeptide repeat-containing protein At5g40400... 0.03 OrthoFinder output from all 47 species
Solyc05g051340.3.1 Solyc05g051340 group-II intron mitochondrial splicing factor (MISF26) 0.04 OrthoFinder output from all 47 species
Solyc11g073270.1.1 Solyc11g073270 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 354 403
IPR002885 Pentatricopeptide_repeat 459 508
IPR002885 Pentatricopeptide_repeat 214 263
IPR002885 Pentatricopeptide_repeat 286 333
IPR002885 Pentatricopeptide_repeat 427 457
No external refs found!