AMTR_s00001p00152770 (RNA_POL_II_LSRNA_POL_I...)

Aliases : RNA_POL_II_LSRNA_POL_II_LS, NRPB1, RPB1, RNA_POL_II_LS, evm_27.TU.AmTr_v1.0_scaffold00001.137

Description : RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic subunits.subunit 1

Gene families : OG0003577 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003577_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00001p00152770
Cluster	HCCA: Cluster_109

Target	Alias	Description	ECC score	Gene Family Method
AT4G35800	RNA_POL_II_LSRNA_...	RNA polymerase II large subunit	0.16	OrthoFinder output from all 47 species
Adi_g039693	RNA_POL_II_LSRNA_...	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Adi_g086870	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.07	OrthoFinder output from all 47 species
Aev_g06184	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
Ala_g17287	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
Aob_g40185	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.02	OrthoFinder output from all 47 species
Aop_g00820	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.04	OrthoFinder output from all 47 species
Aspi01Gene16196.t1	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
Ceric.19G033900.1	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.07	OrthoFinder output from all 47 species
Dcu_g02060	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.06	OrthoFinder output from all 47 species
Dde_g04017	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
Ehy_g17809	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.04	OrthoFinder output from all 47 species
Ehy_g31167	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
GSVIVT01008740001	RNA_POL_II_LSRNA_...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.08	OrthoFinder output from all 47 species
Gb_06029	RNA_POL_II_LSRNA_...	subunit 1 of Pol II RNA polymerase	0.06	OrthoFinder output from all 47 species
Gb_33197	RNA_POL_II_LSRNA_...	subunit 1 of Pol II RNA polymerase	0.13	OrthoFinder output from all 47 species
LOC_Os05g05860.1	RNA_POL_II_LSRNA_...	subunit 1 of Pol II RNA polymerase	0.02	OrthoFinder output from all 47 species
Len_g33526	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.02	OrthoFinder output from all 47 species
Lfl_g08690	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.02	OrthoFinder output from all 47 species
MA_8544g0010	RNA_POL_II_LSRNA_...	subunit 1 of Pol II RNA polymerase	0.05	OrthoFinder output from all 47 species
Mp4g14340.1	RNA_POL_II_LSRNA_...	subunit 1 of Pol II RNA polymerase	0.04	OrthoFinder output from all 47 species
Nbi_g12702	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.04	OrthoFinder output from all 47 species
Ore_g27265	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.07	OrthoFinder output from all 47 species
Pir_g10467	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
Pnu_g11469	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014794	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
Sam_g30215	No alias	component *(NRPB1) of RNA polymerase II complex &...	0.05	OrthoFinder output from all 47 species
Smo110201	RNA_POL_II_LSRNA_...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.03	OrthoFinder output from all 47 species
Solyc02g083350.4.1	RNA_POL_II_LSRNA_...	DNA-directed RNA polymerase II subunit 1 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Spa_g08443	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.04	OrthoFinder output from all 47 species
Tin_g05249	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.05	OrthoFinder output from all 47 species
Zm00001e040236_P001	RNA_POL_II_LSRNA_...	subunit 1 of Pol II RNA polymerase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000428	DNA-directed RNA polymerase complex	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005665	RNA polymerase II, core complex	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006366	transcription by RNA polymerase II	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
CC	GO:0030880	RNA polymerase complex	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	None	Extended
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
BP	GO:0006606	protein import into nucleus	IEP	HCCA
BP	GO:0006813	potassium ion transport	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	HCCA
BP	GO:0034504	protein localization to nucleus	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051170	import into nucleus	IEP	HCCA
BP	GO:0071805	potassium ion transmembrane transport	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007083	RNA_pol_Rpb1_4	717	821
IPR007066	RNA_pol_Rpb1_3	527	690
IPR007081	RNA_pol_Rpb1_5	828	1418
IPR000722	RNA_pol_asu	355	523
IPR007073	RNA_pol_Rpb1_7	1163	1297
IPR000684	RNA_pol_II_repeat_euk	1553	1566
IPR000684	RNA_pol_II_repeat_euk	1817	1829
IPR000684	RNA_pol_II_repeat_euk	1721	1734
IPR000684	RNA_pol_II_repeat_euk	1679	1692
IPR000684	RNA_pol_II_repeat_euk	1707	1720
IPR000684	RNA_pol_II_repeat_euk	1665	1678
IPR000684	RNA_pol_II_repeat_euk	1637	1650
IPR000684	RNA_pol_II_repeat_euk	1595	1608
IPR000684	RNA_pol_II_repeat_euk	1693	1706
IPR000684	RNA_pol_II_repeat_euk	1728	1741
IPR000684	RNA_pol_II_repeat_euk	1651	1664
IPR000684	RNA_pol_II_repeat_euk	1567	1580
IPR000684	RNA_pol_II_repeat_euk	1775	1788
IPR000684	RNA_pol_II_repeat_euk	1581	1594
IPR000684	RNA_pol_II_repeat_euk	1609	1622
IPR000684	RNA_pol_II_repeat_euk	1623	1636
IPR007080	RNA_pol_Rpb1_1	14	353
IPR007075	RNA_pol_Rpb1_6	894	1078

External Links

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AMTR_s00001p00152770 (RNA_POL_II_LSRNA_POL_I...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation