AMTR_s00001p00128450 (MCM4,...)

Aliases : MCM4, evm_27.TU.AmTr_v1.0_scaffold00001.103

Description : Cell cycle.interphase.DNA replication.preinitiation.MCM replicative DNA helicase complex.MCM4 component

Gene families : OG0001056 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001056_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00001p00128450
Cluster	HCCA: Cluster_100

Target	Alias	Description	ECC score	Gene Family Method
AT2G14050	MCM9	minichromosome maintenance 9	0.04	OrthoFinder output from all 47 species
AT2G16440	MCM4	Minichromosome maintenance (MCM2/3/5) family protein	0.06	OrthoFinder output from all 47 species
AT4G02060	MCM7, PRL	Minichromosome maintenance (MCM2/3/5) family protein	0.07	OrthoFinder output from all 47 species
Adi_g007814	MCM4	component *(MCM4) of MCM replicative DNA helicase...	0.04	OrthoFinder output from all 47 species
Adi_g059401	MCM9	component *(MCM9) of MCM8-9 cell cycle auxiliary complex...	0.04	OrthoFinder output from all 47 species
Ala_g24409	MCM4	component *(MCM4) of MCM replicative DNA helicase...	0.08	OrthoFinder output from all 47 species
Ala_g28206	MCM7, PRL	component *(MCM7) of MCM replicative DNA helicase...	0.12	OrthoFinder output from all 47 species
Als_g03794	MCM7, PRL	component *(MCM7) of MCM replicative DNA helicase...	0.03	OrthoFinder output from all 47 species
Als_g06966	MCM4	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Als_g07824	MCM4	not classified & original description: none	0.1	OrthoFinder output from all 47 species
Als_g07825	MCM4	component *(MCM4) of MCM replicative DNA helicase...	0.1	OrthoFinder output from all 47 species
Als_g11754	MCM4	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g09863	MCM7, PRL	component *(MCM7) of MCM replicative DNA helicase...	0.12	OrthoFinder output from all 47 species
Aop_g23244	MCM4	component *(MCM4) of MCM replicative DNA helicase...	0.11	OrthoFinder output from all 47 species
Aspi01Gene22827.t1	MCM4, Aspi01Gene22827	component *(MCM4) of MCM replicative DNA helicase...	0.06	OrthoFinder output from all 47 species
Aspi01Gene25633.t1	MCM4, Aspi01Gene25633	component *(MCM4) of MCM replicative DNA helicase...	0.12	OrthoFinder output from all 47 species
Aspi01Gene25932.t1	MCM7, PRL,...	component *(MCM7) of MCM replicative DNA helicase...	0.09	OrthoFinder output from all 47 species
Azfi_s0206.g057809	MCM4	component *(MCM4) of MCM replicative DNA helicase...	0.03	OrthoFinder output from all 47 species
Azfi_s0544.g076399	MCM7, PRL	component *(MCM7) of MCM replicative DNA helicase...	0.16	OrthoFinder output from all 47 species
Cba_g13812	MCM4	component *(MCM4) of MCM replicative DNA helicase...	0.04	OrthoFinder output from all 47 species
Ceric.04G002100.1	MCM7, PRL,...	component *(MCM7) of MCM replicative DNA helicase...	0.17	OrthoFinder output from all 47 species
Ceric.10G009500.1	MCM4, Ceric.10G009500	component *(MCM4) of MCM replicative DNA helicase...	0.2	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000144.164	MCM4	Cell cycle.interphase.DNA replication.preinitiation.MCM...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000241.38	MCM7, PRL	Cell cycle.interphase.DNA replication.preinitiation.MCM...	0.01	OrthoFinder output from all 47 species
Cre07.g316850	MCM4	Cell cycle.interphase.DNA replication.preinitiation.MCM...	0.08	OrthoFinder output from all 47 species
Cre10.g455850	MCM7, PRL	Cell cycle.interphase.DNA replication.preinitiation.MCM...	0.06	OrthoFinder output from all 47 species
Cre12.g540927	MCM9	Probable DNA helicase MCM9 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Dac_g06469	MCM7, PRL	component *(MCM7) of MCM replicative DNA helicase...	0.06	OrthoFinder output from all 47 species
Dac_g14939	MCM4	component *(MCM4) of MCM replicative DNA helicase...	0.07	OrthoFinder output from all 47 species
Dac_g15991	MCM4	component *(MCM4) of MCM replicative DNA helicase...	0.06	OrthoFinder output from all 47 species
Dcu_g05722	MCM4	component *(MCM4) of MCM replicative DNA helicase...	0.18	OrthoFinder output from all 47 species
Dcu_g40402	MCM7, PRL	component *(MCM7) of MCM replicative DNA helicase...	0.12	OrthoFinder output from all 47 species
Dcu_g42313	MCM9	component *(MCM9) of MCM8-9 cell cycle auxiliary complex...	0.03	OrthoFinder output from all 47 species
GSVIVT01024207001	MCM4	Cell cycle.interphase.DNA replication.preinitiation.MCM...	0.16	OrthoFinder output from all 47 species
GSVIVT01028118001	MCM7, PRL	Cell cycle.interphase.DNA replication.preinitiation.MCM...	0.2	OrthoFinder output from all 47 species
Gb_09191	MCM4	component MCM4 of MCM replicative DNA helicase complex	0.1	OrthoFinder output from all 47 species
Gb_35205	MCM7, PRL	component MCM7 of MCM replicative DNA helicase complex	0.14	OrthoFinder output from all 47 species
Gb_36024	MCM4	component MCM4 of MCM replicative DNA helicase complex	0.15	OrthoFinder output from all 47 species
LOC_Os01g36390.1	MCM4, LOC_Os01g36390	component MCM4 of MCM replicative DNA helicase complex	0.15	OrthoFinder output from all 47 species
LOC_Os12g37400.1	MCM7, PRL, LOC_Os12g37400	component MCM7 of MCM replicative DNA helicase complex	0.16	OrthoFinder output from all 47 species
Len_g00736	MCM4	component *(MCM4) of MCM replicative DNA helicase...	0.13	OrthoFinder output from all 47 species
Len_g11914	MCM7, PRL	component *(MCM7) of MCM replicative DNA helicase...	0.05	OrthoFinder output from all 47 species
Lfl_g19272	MCM4	component *(MCM4) of MCM replicative DNA helicase...	0.12	OrthoFinder output from all 47 species
Lfl_g39364	MCM7, PRL	component *(MCM7) of MCM replicative DNA helicase...	0.08	OrthoFinder output from all 47 species
MA_10426237g0010	MCM7, PRL	component MCM7 of MCM replicative DNA helicase complex	0.21	OrthoFinder output from all 47 species
MA_10434231g0010	MCM4	DNA replication licensing factor MCM4 OS=Oryza sativa...	0.22	OrthoFinder output from all 47 species
Mp2g02600.1	MCM7, PRL	component MCM7 of MCM replicative DNA helicase complex	0.15	OrthoFinder output from all 47 species
Mp3g02380.1	MCM4	component MCM4 of MCM replicative DNA helicase complex	0.14	OrthoFinder output from all 47 species
Mp4g02430.1	MCM9	component MCM9 of MCM8-9 cell cycle auxiliary complex	0.13	OrthoFinder output from all 47 species
Msp_g06139	MCM7, PRL	component *(MCM7) of MCM replicative DNA helicase...	0.1	OrthoFinder output from all 47 species
Msp_g09222	MCM4	component *(MCM4) of MCM replicative DNA helicase...	0.09	OrthoFinder output from all 47 species
Msp_g20406	MCM4	component *(MCM4) of MCM replicative DNA helicase...	0.02	OrthoFinder output from all 47 species
Nbi_g03098	MCM4	component *(MCM4) of MCM replicative DNA helicase...	0.14	OrthoFinder output from all 47 species
Nbi_g04377	MCM7, PRL	component *(MCM7) of MCM replicative DNA helicase...	0.14	OrthoFinder output from all 47 species
Ore_g25232	MCM4	component *(MCM4) of MCM replicative DNA helicase...	0.02	OrthoFinder output from all 47 species
Ppi_g01337	MCM4	component *(MCM4) of MCM replicative DNA helicase...	0.09	OrthoFinder output from all 47 species
Ppi_g25980	MCM7, PRL	component *(MCM7) of MCM replicative DNA helicase...	0.1	OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004187	MCM7, PRL	component *(MCM7) of MCM replicative DNA helicase...	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0298.g027193	MCM4	component *(MCM4) of MCM replicative DNA helicase...	0.11	OrthoFinder output from all 47 species
Sam_g06717	No alias	component *(MCM4) of MCM replicative DNA helicase...	0.05	OrthoFinder output from all 47 species
Sam_g09734	No alias	component *(MCM7) of MCM replicative DNA helicase...	0.08	OrthoFinder output from all 47 species
Sam_g27151	No alias	component *(MCM7) of MCM replicative DNA helicase...	0.07	OrthoFinder output from all 47 species
Smo163959	MCM7, PRL	Cell cycle.interphase.DNA replication.preinitiation.MCM...	0.02	OrthoFinder output from all 47 species
Solyc01g079500.4.1	MCM7, PRL, Solyc01g079500	component MCM7 of MCM replicative DNA helicase complex	0.15	OrthoFinder output from all 47 species
Solyc01g105520.3.1	MCM9, Solyc01g105520	component MCM9 of MCM8-9 cell cycle auxiliary complex	0.07	OrthoFinder output from all 47 species
Solyc01g110130.3.1	MCM4, Solyc01g110130	component MCM4 of MCM replicative DNA helicase complex	0.13	OrthoFinder output from all 47 species
Spa_g10751	MCM4	component *(MCM4) of MCM replicative DNA helicase...	0.1	OrthoFinder output from all 47 species
Spa_g11927	MCM7, PRL	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Spa_g11928	MCM7, PRL	component *(MCM7) of MCM replicative DNA helicase...	0.07	OrthoFinder output from all 47 species
Tin_g06082	MCM7, PRL	component *(MCM7) of MCM replicative DNA helicase...	0.12	OrthoFinder output from all 47 species
Tin_g12164	MCM4	component *(MCM4) of MCM replicative DNA helicase...	0.09	OrthoFinder output from all 47 species
Zm00001e002873_P001	MCM7, PRL, Zm00001e002873	component MCM7 of MCM replicative DNA helicase complex	0.13	OrthoFinder output from all 47 species
Zm00001e018214_P001	MCM7, PRL, Zm00001e018214	component MCM7 of MCM replicative DNA helicase complex	0.14	OrthoFinder output from all 47 species
Zm00001e026379_P001	MCM4, Zm00001e026379	component MCM4 of MCM replicative DNA helicase complex	0.1	OrthoFinder output from all 47 species
Zm00001e030823_P001	MCM9, Zm00001e030823	component MCM9 of MCM8-9 cell cycle auxiliary complex	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000226	microtubule cytoskeleton organization	IEP	HCCA
BP	GO:0000910	cytokinesis	IEP	HCCA
MF	GO:0001882	nucleoside binding	IEP	HCCA
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
MF	GO:0004806	triglyceride lipase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005875	microtubule associated complex	IEP	HCCA
BP	GO:0006270	DNA replication initiation	IEP	HCCA
BP	GO:0006304	DNA modification	IEP	HCCA
BP	GO:0006305	DNA alkylation	IEP	HCCA
BP	GO:0006306	DNA methylation	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007010	cytoskeleton organization	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007018	microtubule-based movement	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
MF	GO:0016298	lipase activity	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
CC	GO:0042555	MCM complex	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0044728	DNA methylation or demethylation	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001208	MCM_dom	406	713

External Links

No external refs found!

AMTR_s00001p00128450 (MCM4,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation