AMTR_s00001p00125090 (CLS8, RNR1, ATRNR1,...)

Aliases : CLS8, RNR1, ATRNR1, R1, evm_27.TU.AmTr_v1.0_scaffold00001.97

Description : Ribonucleoside-diphosphate reductase large subunit OS=Arabidopsis thaliana

Gene families : OG0003120 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003120_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00001p00125090
Cluster	HCCA: Cluster_100

Target	Alias	Description	ECC score	Gene Family Method
AT2G21790	CLS8, RNR1, ATRNR1, R1	ribonucleotide reductase 1	0.15	OrthoFinder output from all 47 species
Adi_g012334	CLS8, RNR1, ATRNR1, R1	EC_1.17 oxidoreductase acting on CH or CH2 group &...	0.02	OrthoFinder output from all 47 species
Adi_g017284	CLS8, RNR1, ATRNR1, R1	EC_1.17 oxidoreductase acting on CH or CH2 group &...	0.04	OrthoFinder output from all 47 species
Aev_g21859	CLS8, RNR1, ATRNR1, R1	EC_1.17 oxidoreductase acting on CH or CH2 group &...	0.03	OrthoFinder output from all 47 species
Ala_g26909	CLS8, RNR1, ATRNR1, R1	EC_1.17 oxidoreductase acting on CH or CH2 group &...	0.06	OrthoFinder output from all 47 species
Als_g05071	CLS8, RNR1, ATRNR1, R1	EC_1.17 oxidoreductase acting on CH or CH2 group &...	0.09	OrthoFinder output from all 47 species
Als_g12739	CLS8, RNR1, ATRNR1, R1	EC_1.17 oxidoreductase acting on CH or CH2 group &...	0.03	OrthoFinder output from all 47 species
Aob_g03473	CLS8, RNR1, ATRNR1, R1	EC_1.17 oxidoreductase acting on CH or CH2 group &...	0.02	OrthoFinder output from all 47 species
Aop_g10880	CLS8, RNR1, ATRNR1, R1	EC_1.17 oxidoreductase acting on CH or CH2 group &...	0.07	OrthoFinder output from all 47 species
Aop_g35708	CLS8, RNR1, ATRNR1, R1	EC_1.17 oxidoreductase acting on CH or CH2 group &...	0.02	OrthoFinder output from all 47 species
Azfi_s0132.g049208	CLS8, RNR1, ATRNR1, R1	EC_1.17 oxidoreductase acting on CH or CH2 group &...	0.04	OrthoFinder output from all 47 species
Ceric.10G044500.1	CLS8, RNR1,...	EC_1.17 oxidoreductase acting on CH or CH2 group &...	0.06	OrthoFinder output from all 47 species
Ceric.14G053500.1	CLS8, RNR1,...	EC_1.17 oxidoreductase acting on CH or CH2 group &...	0.15	OrthoFinder output from all 47 species
Cre12.g492950	CLS8, RNR1, ATRNR1, R1	Nucleotide metabolism.deoxynucleotide...	0.03	OrthoFinder output from all 47 species
Dac_g07476	CLS8, RNR1, ATRNR1, R1	EC_1.17 oxidoreductase acting on CH or CH2 group &...	0.07	OrthoFinder output from all 47 species
Dcu_g08236	CLS8, RNR1, ATRNR1, R1	EC_1.17 oxidoreductase acting on CH or CH2 group &...	0.1	OrthoFinder output from all 47 species
Dcu_g12768	CLS8, RNR1, ATRNR1, R1	EC_1.17 oxidoreductase acting on CH or CH2 group &...	0.06	OrthoFinder output from all 47 species
GSVIVT01022278001	CLS8, RNR1, ATRNR1, R1	Nucleotide metabolism.deoxynucleotide...	0.03	OrthoFinder output from all 47 species
Gb_15263	CLS8, RNR1, ATRNR1, R1	Enzyme classification.EC_1 oxidoreductases.EC_1.17...	0.16	OrthoFinder output from all 47 species
Gb_21933	CLS8, RNR1, ATRNR1, R1	large subunit of ribonucleoside-diphosphate reductase heterodimer	0.03	OrthoFinder output from all 47 species
Gb_38108	CLS8, RNR1, ATRNR1, R1	Ribonucleoside-diphosphate reductase large subunit...	0.09	OrthoFinder output from all 47 species
LOC_Os06g07210.1	CLS8, RNR1,...	large subunit of ribonucleoside-diphosphate reductase heterodimer	0.08	OrthoFinder output from all 47 species
Len_g08971	CLS8, RNR1, ATRNR1, R1	EC_1.17 oxidoreductase acting on CH or CH2 group &...	0.08	OrthoFinder output from all 47 species
Len_g15517	CLS8, RNR1, ATRNR1, R1	EC_1.17 oxidoreductase acting on CH or CH2 group &...	0.06	OrthoFinder output from all 47 species
Lfl_g08105	CLS8, RNR1, ATRNR1, R1	EC_1.17 oxidoreductase acting on CH or CH2 group &...	0.05	OrthoFinder output from all 47 species
MA_10435382g0010	CLS8, RNR1, ATRNR1, R1	large subunit of ribonucleoside-diphosphate reductase heterodimer	0.13	OrthoFinder output from all 47 species
MA_158556g0010	CLS8, RNR1, ATRNR1, R1	large subunit of ribonucleoside-diphosphate reductase heterodimer	0.03	OrthoFinder output from all 47 species
Mp2g00850.1	CLS8, RNR1, ATRNR1, R1	large subunit of ribonucleoside-diphosphate reductase heterodimer	0.09	OrthoFinder output from all 47 species
Msp_g13756	CLS8, RNR1, ATRNR1, R1	EC_1.17 oxidoreductase acting on CH or CH2 group &...	0.02	OrthoFinder output from all 47 species
Msp_g15997	CLS8, RNR1, ATRNR1, R1	EC_1.17 oxidoreductase acting on CH or CH2 group &...	0.07	OrthoFinder output from all 47 species
Nbi_g09968	CLS8, RNR1, ATRNR1, R1	EC_1.17 oxidoreductase acting on CH or CH2 group &...	0.08	OrthoFinder output from all 47 species
Nbi_g13666	CLS8, RNR1, ATRNR1, R1	EC_1.17 oxidoreductase acting on CH or CH2 group &...	0.13	OrthoFinder output from all 47 species
Nbi_g23762	CLS8, RNR1, ATRNR1, R1	EC_1.17 oxidoreductase acting on CH or CH2 group &...	0.11	OrthoFinder output from all 47 species
Ppi_g05291	CLS8, RNR1, ATRNR1, R1	EC_1.17 oxidoreductase acting on CH or CH2 group &...	0.05	OrthoFinder output from all 47 species
Ppi_g39870	CLS8, RNR1, ATRNR1, R1	EC_1.17 oxidoreductase acting on CH or CH2 group &...	0.07	OrthoFinder output from all 47 species
Sam_g13596	No alias	EC_1.17 oxidoreductase acting on CH or CH2 group &...	0.03	OrthoFinder output from all 47 species
Solyc04g012060.3.1	CLS8, RNR1,...	large subunit of ribonucleoside-diphosphate reductase heterodimer	0.03	OrthoFinder output from all 47 species
Solyc04g051350.3.1	CLS8, RNR1,...	large subunit of ribonucleoside-diphosphate reductase heterodimer	0.11	OrthoFinder output from all 47 species
Spa_g09390	CLS8, RNR1, ATRNR1, R1	EC_1.17 oxidoreductase acting on CH or CH2 group &...	0.09	OrthoFinder output from all 47 species
Spa_g25974	CLS8, RNR1, ATRNR1, R1	EC_1.17 oxidoreductase acting on CH or CH2 group &...	0.04	OrthoFinder output from all 47 species
Spa_g28665	CLS8, RNR1, ATRNR1, R1	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Tin_g05623	CLS8, RNR1, ATRNR1, R1	EC_1.17 oxidoreductase acTing on CH or CH2 group &...	0.09	OrthoFinder output from all 47 species
Tin_g06641	CLS8, RNR1, ATRNR1, R1	EC_1.17 oxidoreductase acTing on CH or CH2 group &...	0.1	OrthoFinder output from all 47 species
Tin_g12210	CLS8, RNR1, ATRNR1, R1	EC_1.17 oxidoreductase acTing on CH or CH2 group &...	0.09	OrthoFinder output from all 47 species
Tin_g36067	CLS8, RNR1, ATRNR1, R1	EC_1.17 oxidoreductase acTing on CH or CH2 group &...	0.08	OrthoFinder output from all 47 species
Zm00001e030111_P001	CLS8, RNR1,...	large subunit of ribonucleoside-diphosphate reductase heterodimer	0.07	OrthoFinder output from all 47 species
Zm00001e036393_P001	CLS8, RNR1,...	large subunit of ribonucleoside-diphosphate reductase heterodimer	0.12	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004748	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	None	Extended
MF	GO:0016728	oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0055114	obsolete oxidation-reduction process	IEA	Interproscan
MF	GO:0061731	ribonucleoside-diphosphate reductase activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005144	ATP-cone_dom	2	77
IPR000788	RNR_lg_C	166	318
IPR013509	RNR_lsu_N	93	163

External Links

No external refs found!

AMTR_s00001p00125090 (CLS8, RNR1, ATRNR1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation