AMTR_s00001p00102800 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00001.69

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL18a component

Gene families : OG0001533 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001533_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00001p00102800

Target	Alias	Description	ECC score	Gene Family Method
AT2G34480	No alias	Ribosomal protein L18ae/LX family protein	0.08	OrthoFinder output from all 47 species
AT3G14600	No alias	Ribosomal protein L18ae/LX family protein	0.06	OrthoFinder output from all 47 species
Adi_g075827	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Adi_g125831	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Als_g26369	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aob_g37546	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g00151	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g20768	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aop_g20873	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000615.59	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	OrthoFinder output from all 47 species
Cre01.g047750	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.08	OrthoFinder output from all 47 species
Dac_g15791	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Dcu_g42842	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
GSVIVT01000485001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
GSVIVT01021430001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
GSVIVT01021433001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
Gb_05341	No alias	component RPL18a of LSU proteome component	0.03	OrthoFinder output from all 47 species
LOC_Os01g47660.1	LOC_Os01g47660	component RPL18a of LSU proteome component	0.05	OrthoFinder output from all 47 species
LOC_Os01g54870.1	LOC_Os01g54870	component RPL18a of LSU proteome component	0.03	OrthoFinder output from all 47 species
LOC_Os05g49030.1	LOC_Os05g49030	component RPL18a of LSU proteome component	0.05	OrthoFinder output from all 47 species
Len_g23359	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g28150	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
MA_12029g0010	No alias	component RPL18a of LSU proteome component	0.02	OrthoFinder output from all 47 species
Mp1g17730.1	No alias	component RPL18a of LSU proteome component	0.08	OrthoFinder output from all 47 species
Ppi_g27285	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g14890	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g28696	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sam_g32152	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Smo227198	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
Solyc02g070640.3.1	Solyc02g070640	component RPL18a of LSU proteome component	0.03	OrthoFinder output from all 47 species
Solyc06g065590.4.1	Solyc06g065590	component RPL18a of LSU proteome component	0.04	OrthoFinder output from all 47 species
Solyc08g016180.3.1	Solyc08g016180	component RPL18a of LSU proteome component	0.04	OrthoFinder output from all 47 species
Tin_g15697	No alias	component *(eL20) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Zm00001e020218_P001	Zm00001e020218	component RPL18a of LSU proteome component	0.03	OrthoFinder output from all 47 species
Zm00001e026540_P001	Zm00001e026540	component RPL18a of LSU proteome component	0.05	OrthoFinder output from all 47 species
Zm00001e028015_P002	Zm00001e028015	component RPL18a of LSU proteome component	0.05	OrthoFinder output from all 47 species
Zm00001e032436_P001	Zm00001e032436	component RPL18a of LSU proteome component	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004298	threonine-type endopeptidase activity	IEP	HCCA
MF	GO:0005048	signal sequence binding	IEP	HCCA
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
CC	GO:0005786	signal recognition particle, endoplasmic reticulum targeting	IEP	HCCA
CC	GO:0005839	proteasome core complex	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006612	protein targeting to membrane	IEP	HCCA
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006644	phospholipid metabolic process	IEP	HCCA
BP	GO:0006650	glycerophospholipid metabolic process	IEP	HCCA
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
MF	GO:0008312	7S RNA binding	IEP	HCCA
BP	GO:0008654	phospholipid biosynthetic process	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0030942	endoplasmic reticulum signal peptide binding	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
MF	GO:0033218	amide binding	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
MF	GO:0042277	peptide binding	IEP	HCCA
BP	GO:0045017	glycerolipid biosynthetic process	IEP	HCCA
BP	GO:0045047	protein targeting to ER	IEP	HCCA
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	HCCA
BP	GO:0046486	glycerolipid metabolic process	IEP	HCCA
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	HCCA
BP	GO:0046854	phosphatidylinositol phosphate biosynthetic process	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
CC	GO:0048500	signal recognition particle	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
MF	GO:0070003	threonine-type peptidase activity	IEP	HCCA
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR023573	Ribosomal_L18a//L18Ae/LX	5	88

External Links

No external refs found!

AMTR_s00001p00102800 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation