AMTR_s00001p00069970 (RPL23AB,...)

Aliases : RPL23AB, evm_27.TU.AmTr_v1.0_scaffold00001.45

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL23a component

Gene families : OG0001401 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001401_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00001p00069970

Target	Alias	Description	ECC score	Gene Family Method
AT2G39460	RPL23A, RPL23AA, ATRPL23A	ribosomal protein L23AA	0.21	OrthoFinder output from all 47 species
AT3G55280	RPL23AB	ribosomal protein L23AB	0.18	OrthoFinder output from all 47 species
Adi_g005345	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Adi_g030286	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Adi_g108756	RPL23AB	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Adi_g128529	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ala_g08733	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ala_g31538	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Als_g12004	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Als_g25154	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Als_g39817	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aop_g12745	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Aop_g18428	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.14	OrthoFinder output from all 47 species
Aop_g19896	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Aspi01Gene13493.t1	RPL23A, RPL23AA,...	component *(uL23) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Aspi01Gene46927.t1	RPL23AB, Aspi01Gene46927	component *(uL23) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cba_g21462	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Cba_g65528	RPL23A, RPL23AA, ATRPL23A	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.12G093600.1	RPL23AB, Ceric.12G093600	component *(uL23) of large ribosomal-subunit (LSU)...	0.13	OrthoFinder output from all 47 species
Ceric.14G096300.1	RPL23AB, Ceric.14G096300	component *(uL23) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000037.39	RPL23AB	Protein biosynthesis.cytosolic ribosome.large subunit...	0.19	OrthoFinder output from all 47 species
Cre06.g282500	RPL23A, RPL23AA, ATRPL23A	Protein biosynthesis.cytosolic ribosome.large subunit...	0.18	OrthoFinder output from all 47 species
Dac_g14569	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Dac_g25800	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Dac_g26842	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g34947	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Dcu_g41671	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ehy_g04260	RPL23A, RPL23AA, ATRPL23A	component *(uL23) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
GSVIVT01025041001	RPL23AB	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
GSVIVT01025606001	No alias	60S ribosomal protein L23a-1 OS=Arabidopsis thaliana	0.08	OrthoFinder output from all 47 species
Gb_38537	RPL23AB	component RPL23a of LSU proteome component	0.13	OrthoFinder output from all 47 species
LOC_Os01g24690.1	RPL23AB, LOC_Os01g24690	component RPL23a of LSU proteome component	0.17	OrthoFinder output from all 47 species
LOC_Os04g42270.2	RPL23AB, LOC_Os04g42270	component RPL23a of LSU proteome component	0.17	OrthoFinder output from all 47 species
Len_g06901	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Len_g26873	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
MA_10430928g0010	RPL23AB	component RPL23a of LSU proteome component	0.27	OrthoFinder output from all 47 species
MA_10436962g0020	RPL23A, RPL23AA, ATRPL23A	component RPL23a of LSU proteome component	0.04	OrthoFinder output from all 47 species
Mp2g00570.1	RPL23AB	component RPL23a of LSU proteome component	0.25	OrthoFinder output from all 47 species
Msp_g10039	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.15	OrthoFinder output from all 47 species
Msp_g35076	RPL23A, RPL23AA, ATRPL23A	component *(uL23) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Msp_g37300	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ore_g10110	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ore_g16620	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pir_g06153	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Pp3c12_19360V3.1	RPL23AB, Pp3c12_19360	ribosomal protein L23AB	0.12	OrthoFinder output from all 47 species
Pp3c13_15920V3.1	RPL23AB, Pp3c13_15920	ribosomal protein L23AB	0.06	OrthoFinder output from all 47 species
Pp3c3_21160V3.1	RPL23AB, Pp3c3_21160	ribosomal protein L23AB	0.09	OrthoFinder output from all 47 species
Pp3c4_8620V3.1	RPL23AB, Pp3c4_8620	ribosomal protein L23AB	0.1	OrthoFinder output from all 47 species
Ppi_g14171	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g25146	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ppi_g48019	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g52143	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0277.g027075	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sam_g00769	No alias	component *(uL23) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Sam_g06116	No alias	component *(uL23) of large ribosomal-subunit (LSU)...	0.19	OrthoFinder output from all 47 species
Sam_g06117	No alias	component *(uL23) of large ribosomal-subunit (LSU)...	0.2	OrthoFinder output from all 47 species
Sam_g22104	No alias	component *(uL23) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Smo271663	RPL23AB	Protein biosynthesis.cytosolic ribosome.large subunit...	0.15	OrthoFinder output from all 47 species
Solyc09g005720.3.1	RPL23AB, Solyc09g005720	component RPL23a of LSU proteome component	0.11	OrthoFinder output from all 47 species
Solyc10g084610.3.1	RPL23AB, Solyc10g084610	component RPL23a of LSU proteome component	0.04	OrthoFinder output from all 47 species
Solyc10g086330.2.1	RPL23AB, Solyc10g086330	component RPL23a of LSU proteome component	0.1	OrthoFinder output from all 47 species
Spa_g01808	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.17	OrthoFinder output from all 47 species
Spa_g10914	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Spa_g25289	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.13	OrthoFinder output from all 47 species
Spa_g45231	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Tin_g03678	RPL23AB	component *(uL23) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Zm00001e007662_P001	RPL23AB, Zm00001e007662	component RPL23a of LSU proteome component	0.1	OrthoFinder output from all 47 species
Zm00001e031062_P001	RPL23A, RPL23AA,...	component RPL23a of LSU proteome component	0.02	OrthoFinder output from all 47 species
Zm00001e041164_P001	RPL23A, RPL23AA,...	component RPL23a of LSU proteome component	0.13	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004298	threonine-type endopeptidase activity	IEP	HCCA
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
CC	GO:0005839	proteasome core complex	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
MF	GO:0070003	threonine-type peptidase activity	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005633	Ribosomal_L23/L25_N	12	66
IPR013025	Ribosomal_L25/23	72	150

External Links

No external refs found!

AMTR_s00001p00069970 (RPL23AB,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation