Aliases : evm_27.TU.AmTr_v1.0_scaffold00001.27
Description : RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.Sm-D3 component
Gene families : OG0003441 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003441_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT1G20580 | No alias | Small nuclear ribonucleoprotein family protein | 0.03 | OrthoFinder output from all 47 species | |
AT1G76300 | SmD3 | snRNP core protein SMD3 | 0.02 | OrthoFinder output from all 47 species | |
Adi_g022523 | No alias | component *(Sm-D3) of U1/U2/U4/U5-associated Sm... | 0.03 | OrthoFinder output from all 47 species | |
Adi_g053483 | No alias | component *(Sm-D3) of U1/U2/U4/U5-associated Sm... | 0.02 | OrthoFinder output from all 47 species | |
Als_g18634 | No alias | component *(Sm-D3) of U1/U2/U4/U5-associated Sm... | 0.04 | OrthoFinder output from all 47 species | |
Als_g41839 | No alias | component *(Sm-D3) of U1/U2/U4/U5-associated Sm... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.09G101500.1 | Ceric.09G101500 | component *(Sm-D3) of U1/U2/U4/U5-associated Sm... | 0.03 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00020912.17 | No alias | RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... | 0.01 | OrthoFinder output from all 47 species | |
Cre10.g455300 | No alias | RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g05211 | No alias | component *(Sm-D3) of U1/U2/U4/U5-associated Sm... | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01013364001 | No alias | RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os02g01250.1 | LOC_Os02g01250 | component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... | 0.07 | OrthoFinder output from all 47 species | |
MA_98884g0010 | No alias | component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... | 0.04 | OrthoFinder output from all 47 species | |
Mp1g11210.1 | No alias | component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... | 0.06 | OrthoFinder output from all 47 species | |
Msp_g07432 | No alias | component *(Sm-D3) of U1/U2/U4/U5-associated Sm... | 0.05 | OrthoFinder output from all 47 species | |
Nbi_g20365 | No alias | component *(Sm-D3) of U1/U2/U4/U5-associated Sm... | 0.04 | OrthoFinder output from all 47 species | |
Solyc02g062240.3.1 | Solyc02g062240 | component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... | 0.03 | OrthoFinder output from all 47 species | |
Solyc02g084020.3.1 | Solyc02g084020 | component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... | 0.04 | OrthoFinder output from all 47 species | |
Solyc03g033600.3.1 | Solyc03g033600 | component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... | 0.03 | OrthoFinder output from all 47 species | |
Spa_g23863 | No alias | component *(Sm-D3) of U1/U2/U4/U5-associated Sm... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e001000_P001 | Zm00001e001000 | component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e013395_P002 | Zm00001e013395 | component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... | 0.06 | OrthoFinder output from all 47 species | |
Zm00001e038613_P001 | Zm00001e038613 | component Sm-D3 of U1/U2/U4/U5-associated Sm accessory... | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
MF | GO:0005048 | signal sequence binding | IEP | HCCA |
MF | GO:0005198 | structural molecule activity | IEP | HCCA |
CC | GO:0005575 | cellular_component | IEP | HCCA |
CC | GO:0005622 | intracellular anatomical structure | IEP | HCCA |
CC | GO:0005786 | signal recognition particle, endoplasmic reticulum targeting | IEP | HCCA |
CC | GO:0005840 | ribosome | IEP | HCCA |
CC | GO:0005875 | microtubule associated complex | IEP | HCCA |
BP | GO:0006412 | translation | IEP | HCCA |
BP | GO:0006414 | translational elongation | IEP | HCCA |
BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
BP | GO:0006605 | protein targeting | IEP | HCCA |
BP | GO:0006612 | protein targeting to membrane | IEP | HCCA |
BP | GO:0006613 | cotranslational protein targeting to membrane | IEP | HCCA |
BP | GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0007017 | microtubule-based process | IEP | HCCA |
MF | GO:0008312 | 7S RNA binding | IEP | HCCA |
BP | GO:0009058 | biosynthetic process | IEP | HCCA |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0009987 | cellular process | IEP | HCCA |
BP | GO:0019538 | protein metabolic process | IEP | HCCA |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | HCCA |
MF | GO:0030942 | endoplasmic reticulum signal peptide binding | IEP | HCCA |
CC | GO:0032991 | protein-containing complex | IEP | HCCA |
MF | GO:0033218 | amide binding | IEP | HCCA |
BP | GO:0033365 | protein localization to organelle | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0042254 | ribosome biogenesis | IEP | HCCA |
MF | GO:0042277 | peptide binding | IEP | HCCA |
BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
CC | GO:0043226 | organelle | IEP | HCCA |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
CC | GO:0043229 | intracellular organelle | IEP | HCCA |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
BP | GO:0043603 | amide metabolic process | IEP | HCCA |
BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
BP | GO:0044085 | cellular component biogenesis | IEP | HCCA |
BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
BP | GO:0045047 | protein targeting to ER | IEP | HCCA |
CC | GO:0048500 | signal recognition particle | IEP | HCCA |
BP | GO:0051668 | localization within membrane | IEP | HCCA |
BP | GO:0070972 | protein localization to endoplasmic reticulum | IEP | HCCA |
BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
BP | GO:0072594 | establishment of protein localization to organelle | IEP | HCCA |
BP | GO:0072599 | establishment of protein localization to endoplasmic reticulum | IEP | HCCA |
BP | GO:0072657 | protein localization to membrane | IEP | HCCA |
BP | GO:0090150 | establishment of protein localization to membrane | IEP | HCCA |
CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001163 | LSM_dom_euk/arc | 11 | 74 |
No external refs found! |