AMTR_s00001p00037390 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00001.20

Description : Probable F-box protein At4g22030 OS=Arabidopsis thaliana


Gene families : OG0001367 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001367_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00001p00037390
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
AT4G04480 No alias unknown protein; LOCATED IN: chloroplast; EXPRESSED IN:... 0.06 OrthoFinder output from all 47 species
AT4G22030 No alias F-box family protein with a domain of unknown function (DUF295) 0.07 OrthoFinder output from all 47 species
Ala_g03889 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene20983.t1 Aspi01Gene20983 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34497.t1 Aspi01Gene34497 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene34559.t1 Aspi01Gene34559 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0182.g056424 No alias not classified & original description: CDS=1-1896 0.02 OrthoFinder output from all 47 species
Azfi_s0334.g065497 No alias not classified & original description: CDS=1-1488 0.04 OrthoFinder output from all 47 species
Cba_g13201 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.17G060400.1 Ceric.17G060400 not classified & original description: pacid=50617546... 0.04 OrthoFinder output from all 47 species
Ceric.1Z179700.1 Ceric.1Z179700 not classified & original description: pacid=50596893... 0.03 OrthoFinder output from all 47 species
Dac_g26357 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g17787 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01012688001 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
GSVIVT01012691001 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_15744 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Gb_15745 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Gb_15746 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
LOC_Os02g13190.1 LOC_Os02g13190 Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os02g13220.1 LOC_Os02g13220 Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os02g13260.1 LOC_Os02g13260 Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp5g00910.1 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp5g17910.1 No alias Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Msp_g35722 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g38437 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g09104 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g080830.1.1 Solyc02g080830 Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc02g080840.1.1 Solyc02g080840 Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.09 OrthoFinder output from all 47 species
Solyc02g080850.1.1 Solyc02g080850 Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e014444_P001 Zm00001e014444 Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e014445_P001 Zm00001e014445 Probable F-box protein At4g22030 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!