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  5. Aev_g04835

Aev_g04835 (PUB13, ATPUB13)


Aliases : PUB13, ATPUB13

Description : E3 ubiquitin ligase *(PUB15) & original description: none


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aev_g04835

Target Alias Description ECC score Gene Family Method Actions
Als_g38714 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0497.g073607 PUB12, AtPUB12 not classified & original description: CDS=1-549 0.03 OrthoFinder output from all 47 species
Dac_g32706 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os01g60860.1 LOC_Os01g60860 U-box domain-containing protein 16 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os08g37570.1 PUB15, LOC_Os08g37570 U-box domain-containing protein 15 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_10329986g0010 No alias U-box domain-containing protein 13 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Pnu_g30472 PUB13, ATPUB13 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0050.g013821 No alias not classified & original description: CDS=1-987 0.02 OrthoFinder output from all 47 species
Sam_g39035 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g114160.1.1 Solyc03g114160 E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005747 mitochondrial respiratory chain complex I IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006528 asparagine metabolic process IEP HCCA
BP GO:0006529 asparagine biosynthetic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
CC GO:0030964 NADH dehydrogenase complex IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
CC GO:0045271 respiratory chain complex I IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098800 inner mitochondrial membrane protein complex IEP HCCA
CC GO:0098803 respiratory chain complex IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
CC GO:1902495 transmembrane transporter complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
CC GO:1990351 transporter complex IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 293 363
IPR000225 Armadillo 506 544
IPR000225 Armadillo 423 462
IPR000225 Armadillo 548 585
IPR000225 Armadillo 588 626
IPR000225 Armadillo 465 503
No external refs found!