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  5. Aev_g04192

Aev_g04192


Description : component *(Symplekin/Pta1) of Cleavage and Polyadenylation Specificity Factor (CPSF) complex & original description: none


Gene families : OG0002204 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002204_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aev_g04192
Cluster HCCA: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00088050 ESP4,... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.03 OrthoFinder output from all 47 species
AT1G27595 No alias CONTAINS InterPro DOMAIN/s: Symplekin tight junction... 0.03 OrthoFinder output from all 47 species
AT5G01400 ESP4 HEAT repeat-containing protein 0.03 OrthoFinder output from all 47 species
Adi_g081403 No alias component *(Symplekin/Pta1) of Cleavage and... 0.05 OrthoFinder output from all 47 species
Ala_g04252 No alias component *(Symplekin/Pta1) of Cleavage and... 0.06 OrthoFinder output from all 47 species
Ala_g06408 ESP4 component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Als_g23718 No alias component *(Symplekin/Pta1) of Cleavage and... 0.04 OrthoFinder output from all 47 species
Aspi01Gene50301.t1 ESP4, Aspi01Gene50301 component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Cba_g36378 No alias component *(Symplekin/Pta1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Ceric.01G050700.1 Ceric.01G050700 component *(Symplekin/Pta1) of Cleavage and... 0.06 OrthoFinder output from all 47 species
Ceric.12G019100.1 ESP4, Ceric.12G019100 component *(Symplekin/Pta1) of Cleavage and... 0.05 OrthoFinder output from all 47 species
Dac_g01061 ESP4 component *(Symplekin/Pta1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Dac_g06615 No alias component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
GSVIVT01009244001 No alias RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.05 OrthoFinder output from all 47 species
GSVIVT01011157001 ESP4 RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.05 OrthoFinder output from all 47 species
Gb_24672 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.05 OrthoFinder output from all 47 species
LOC_Os01g49940.1 LOC_Os01g49940 component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
LOC_Os07g49320.1 ESP4, LOC_Os07g49320 component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Len_g14162 ESP4 component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Len_g19439 No alias component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Lfl_g06265 No alias component *(Symplekin/Pta1) of Cleavage and... 0.06 OrthoFinder output from all 47 species
MA_433916g0010 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Mp6g03410.1 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Pir_g12624 No alias component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Pir_g22861 ESP4 component *(Symplekin/Pta1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Ppi_g15043 ESP4 component *(Symplekin/Pta1) of Cleavage and... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0168.g024262 No alias component *(Symplekin/Pta1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Smo442688 ESP4 RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.04 OrthoFinder output from all 47 species
Solyc04g076910.3.1 Solyc04g076910 component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Spa_g15317 ESP4 component *(Symplekin/Pta1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Spa_g18107 No alias component *(Symplekin/Pta1) of Cleavage and... 0.04 OrthoFinder output from all 47 species
Zm00001e020082_P004 Zm00001e020082 component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Zm00001e035946_P001 ESP4, Zm00001e035946 component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR022075 Symplekin_C 1158 1336
IPR032460 Symplekin/Pta1_N 112 333
No external refs found!