LOC_Os08g42560.1

Description : glycine-tRNA ligase

Gene families : OG_01_0003762 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003762_tree ,
OG_02_0004015 (LandPlants) Phylogenetic Tree(s): OG_02_0004015_tree ,
OG_03_0004457 (SeedPlants) Phylogenetic Tree(s): OG_03_0004457_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os08g42560.1
Cluster	HCCA: Cluster_134

Target	Alias	Description	ECC score	Gene Family Method
AT1G29880	No alias	glycyl-tRNA synthetase / glycine--tRNA ligase	0.04	Archaeplastida
Cre05.g233800	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.1	Archaeplastida
GSVIVT01001092001	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.04	Archaeplastida
Mp7g10240.1	No alias	glycine-tRNA ligase	0.07	Archaeplastida
Pp3c6_4010V3.1	No alias	glycyl-tRNA synthetase / glycine--tRNA ligase	0.07	Archaeplastida
Smo268427	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.02	Archaeplastida
Solyc11g039830.2.1	No alias	glycine-tRNA ligase	0.06	Archaeplastida
Zm00001e003709_P001	No alias	glycine-tRNA ligase	0.05	Archaeplastida
Zm00001e024231_P001	No alias	glycine-tRNA ligase	0.06	Archaeplastida
AT1G29880	No alias	glycyl-tRNA synthetase / glycine--tRNA ligase	0.04	LandPlants
GSVIVT01001092001	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.04	LandPlants
Mp7g10240.1	No alias	glycine-tRNA ligase	0.07	LandPlants
Pp3c6_4010V3.1	No alias	glycyl-tRNA synthetase / glycine--tRNA ligase	0.07	LandPlants
Solyc11g039830.2.1	No alias	glycine-tRNA ligase	0.05	LandPlants
Zm00001e003709_P001	No alias	glycine-tRNA ligase	0.05	LandPlants
Zm00001e024231_P001	No alias	glycine-tRNA ligase	0.06	LandPlants
AT1G29880	No alias	glycyl-tRNA synthetase / glycine--tRNA ligase	0.04	SeedPlants
GSVIVT01001092001	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.03	SeedPlants
Solyc11g039830.2.1	No alias	glycine-tRNA ligase	0.04	SeedPlants
Zm00001e003709_P001	No alias	glycine-tRNA ligase	0.03	SeedPlants
Zm00001e024231_P001	No alias	glycine-tRNA ligase	0.04	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	IEA	Interproscan
BP	GO:0006520	cellular amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002314	aa-tRNA-synt_IIb	302	600
IPR000738	WHEP-TRS_dom	63	104
IPR004154	Anticodon-bd	627	714

External Links

No external refs found!

LOC_Os08g42560.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation