Zm00001d018542 (GRMZM2G133764)


Aliases : GRMZM2G133764

Description : 29.2.2.3.5 protein.synthesis.ribosome biogenesis.Pre-rRNA processing and modifications.DExD-box helicases Encodes an RNA helicase that may be a component of the Exon Junction Complex. Subcellular localization is modulated by stress. Under normal conditions it is localized to the nuceloplasm but under hyopoxic conditions it localizes to the nucleolus and splicing speckles. eukaryotic initiation factor 4A-III (EIF4A-III)


Gene families : OG_01_0000729 (Gene family) Phylogenetic Tree(s): OG0000729_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Zm00001d018542
Cluster HCCA cluster: Cluster_341

Target Alias Description ECC score Gene Family Method Actions
AT1G72730 No alias DEA(D/H)-box RNA helicase family protein 0.03 Gene family
AT3G13920 TIF4A1, EIF4A1, RH4 eukaryotic translation initiation factor 4A1 0.04 Gene family
Cpa|evm.model.tig00001339.22 No alias 29.2.2.3.5 protein.synthesis.ribosome... 0.02 Gene family
Cre03.g199647 No alias 29.2.2.3.5 protein.synthesis.ribosome... 0.03 Gene family
GSVIVT01015173001 No alias 29.2.3 protein.synthesis.initiation member of eIF4A -... 0.02 Gene family
GSVIVT01036113001 No alias 29.2.2.3.5 protein.synthesis.ribosome... 0.09 Gene family
LOC_Os06g48750 Os06g0701100 29.2.3 protein.synthesis.initiation eukaryotic... 0.03 Gene family
Solyc06g062800.3.1 Solyc06g062800.3 29.2.3 protein.synthesis.initiation member of eIF4A -... 0.03 Gene family
Solyc08g062800.3.1 Solyc08g062800.3 29.2.3 protein.synthesis.initiation eukaryotic... 0.05 Gene family
Solyc11g033280.2.1 Solyc11g033280.2 29.2.2.3.5 protein.synthesis.ribosome... 0.04 Gene family
Solyc12g095990.2.1 Solyc12g095990.2 29.2.3 protein.synthesis.initiation eukaryotic... 0.03 Gene family
Zm00001d051840 GRMZM2G018947 29.2.2.3.5 protein.synthesis.ribosome... 0.08 Gene family

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan
MF GO:0005524 ATP binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 59 221
IPR001650 Helicase_C 260 368
No external refs found!