Zm00001d018421 (GRMZM2G163200)


Aliases : GRMZM2G163200

Description : 27.3.9 RNA.regulation of transcription.C2C2(Zn) GATA transcription factor family Encodes a protein containing a GATA type zinc finger domain that is expressed in the embryo axis and involved in germination. Mutants have a reduced rate of germination even when stratified. BLUE MICROPYLAR END 3 (BME3)


Gene families : OG_01_0000059 (Gene family) Phylogenetic Tree(s): OG0000059_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Zm00001d018421
Cluster HCCA cluster: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
AT2G45050 GATA2 GATA transcription factor 2 0.03 Gene family
AT3G54810 BME3-ZF, BME3, GATA8 Plant-specific GATA-type zinc finger transcription... 0.03 Gene family
AT4G26150 GATA22, CGA1, GNL cytokinin-responsive gata factor 1 0.02 Gene family
AT4G32890 GATA9 GATA transcription factor 9 0.04 Gene family
GSVIVT01016265001 No alias 27.3.9 RNA.regulation of transcription.C2C2(Zn) GATA... 0.03 Gene family
GSVIVT01024194001 No alias 27.3.9 RNA.regulation of transcription.C2C2(Zn) GATA... 0.03 Gene family
GSVIVT01035614001 No alias 27.3.9 RNA.regulation of transcription.C2C2(Zn) GATA... 0.02 Gene family
LOC_Os02g56250 Os02g0806300,... 27.3.9 RNA.regulation of transcription.C2C2(Zn) GATA... 0.03 Gene family
MA_103421g0030 No alias 27.3.9 RNA.regulation of transcription.C2C2(Zn) GATA... 0.02 Gene family
Solyc04g015360.3.1 Solyc04g015360.3 27.3.9 RNA.regulation of transcription.C2C2(Zn) GATA... 0.05 Gene family
Solyc05g056120.3.1 Solyc05g056120.3 27.3.9 RNA.regulation of transcription.C2C2(Zn) GATA... 0.09 Gene family
Zm00001d002811 GRMZM2G404973 27.3.9 RNA.regulation of transcription.C2C2(Zn) GATA... 0.03 Gene family
Zm00001d009668 GRMZM2G397616 27.3.9 RNA.regulation of transcription.C2C2(Zn) GATA... 0.04 Gene family
Zm00001d039113 GRMZM2G325850 No description available 0.03 Gene family
Zm00001d047081 GRMZM2G101058 27.3.9 RNA.regulation of transcription.C2C2(Zn) GATA... 0.02 Gene family

Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
MF GO:0008270 zinc ion binding IEA InterProScan
MF GO:0043565 sequence-specific DNA binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000679 Znf_GATA 339 372
No external refs found!