LOC_Os08g33340.1


Description : shuttle protein (RAD23)


Gene families : OG_01_0001284 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001284_tree ,
OG_02_0001166 (LandPlants) Phylogenetic Tree(s): OG_02_0001166_tree ,
OG_03_0001263 (SeedPlants) Phylogenetic Tree(s): OG_03_0001263_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g33340.1
Cluster HCCA: Cluster_380

Target Alias Description ECC score Gene Family Method Actions
AT1G79650 RAD23B, RAD23 Rad23 UV excision repair protein family 0.03 Archaeplastida
Cre08.g366400 No alias Ubiquitin receptor RAD23b OS=Arabidopsis thaliana 0.07 Archaeplastida
Mp1g26290.1 No alias shuttle protein (RAD23) 0.04 Archaeplastida
Pp3c21_190V3.1 No alias Rad23 UV excision repair protein family 0.02 Archaeplastida
Zm00001e036768_P002 No alias shuttle protein (RAD23) 0.04 Archaeplastida
AT1G79650 RAD23B, RAD23 Rad23 UV excision repair protein family 0.03 LandPlants
Mp1g26290.1 No alias shuttle protein (RAD23) 0.04 LandPlants
Pp3c10_8490V3.1 No alias Rad23 UV excision repair protein family 0.01 LandPlants
Pp3c21_190V3.1 No alias Rad23 UV excision repair protein family 0.02 LandPlants
Smo82644 No alias Ubiquitin receptor RAD23b OS=Arabidopsis thaliana 0.02 LandPlants
Solyc02g063130.4.1 No alias shuttle protein (RAD23) 0.02 LandPlants
Zm00001e036768_P002 No alias shuttle protein (RAD23) 0.04 LandPlants
AMTR_s00156p00078120 evm_27.TU.AmTr_v1... Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica 0.01 SeedPlants
AT1G79650 RAD23B, RAD23 Rad23 UV excision repair protein family 0.03 SeedPlants
Solyc02g085840.2.1 No alias shuttle protein (RAD23) 0.01 SeedPlants
Zm00001e030951_P001 No alias shuttle protein (RAD23) 0.01 SeedPlants
Zm00001e036768_P002 No alias shuttle protein (RAD23) 0.04 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006289 nucleotide-excision repair IEA Interproscan
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000626 Ubiquitin-like_dom 4 76
IPR015360 XPC-bd 274 329
IPR015940 UBA 162 197
IPR015940 UBA 354 390
No external refs found!