LOC_Os08g33340.1

Description : shuttle protein (RAD23)

Gene families : OG_01_0001284 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001284_tree ,
OG_02_0001166 (LandPlants) Phylogenetic Tree(s): OG_02_0001166_tree ,
OG_03_0001263 (SeedPlants) Phylogenetic Tree(s): OG_03_0001263_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os08g33340.1
Cluster	HCCA: Cluster_380

Target	Alias	Description	ECC score	Gene Family Method
AT1G79650	RAD23B, RAD23	Rad23 UV excision repair protein family	0.03	Archaeplastida
Cre08.g366400	No alias	Ubiquitin receptor RAD23b OS=Arabidopsis thaliana	0.07	Archaeplastida
Mp1g26290.1	No alias	shuttle protein (RAD23)	0.04	Archaeplastida
Pp3c21_190V3.1	No alias	Rad23 UV excision repair protein family	0.02	Archaeplastida
Zm00001e036768_P002	No alias	shuttle protein (RAD23)	0.04	Archaeplastida
AT1G79650	RAD23B, RAD23	Rad23 UV excision repair protein family	0.03	LandPlants
Mp1g26290.1	No alias	shuttle protein (RAD23)	0.04	LandPlants
Pp3c10_8490V3.1	No alias	Rad23 UV excision repair protein family	0.01	LandPlants
Pp3c21_190V3.1	No alias	Rad23 UV excision repair protein family	0.02	LandPlants
Smo82644	No alias	Ubiquitin receptor RAD23b OS=Arabidopsis thaliana	0.02	LandPlants
Solyc02g063130.4.1	No alias	shuttle protein (RAD23)	0.02	LandPlants
Zm00001e036768_P002	No alias	shuttle protein (RAD23)	0.04	LandPlants
AMTR_s00156p00078120	evm_27.TU.AmTr_v1...	Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica	0.01	SeedPlants
AT1G79650	RAD23B, RAD23	Rad23 UV excision repair protein family	0.03	SeedPlants
Solyc02g085840.2.1	No alias	shuttle protein (RAD23)	0.01	SeedPlants
Zm00001e030951_P001	No alias	shuttle protein (RAD23)	0.01	SeedPlants
Zm00001e036768_P002	No alias	shuttle protein (RAD23)	0.04	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003684	damaged DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006289	nucleotide-excision repair	IEA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000626	Ubiquitin-like_dom	4	76
IPR015360	XPC-bd	274	329
IPR015940	UBA	162	197
IPR015940	UBA	354	390

External Links

No external refs found!

LOC_Os08g33340.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation