Zm00001d018142 (GRMZM2G046885)


Aliases : GRMZM2G046885

Description : 33.99 development.unspecified Encodes a nuclear protein that acts as a floral repressor and that functions within the thermosensory pathway. SVP represses FT expression via direct binding to the vCArG III motif in the FT promoter. SHORT VEGETATIVE PHASE (SVP)


Gene families : OG_01_0000006 (Gene family) Phylogenetic Tree(s): OG0000006_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Zm00001d018142
Cluster HCCA cluster: Cluster_210

Target Alias Description ECC score Gene Family Method Actions
AT1G24260 AGL9, SEP3 K-box region and MADS-box transcription factor family protein 0.03 Gene family
AT1G26310 AGL10, CAL1, CAL K-box region and MADS-box transcription factor family protein 0.05 Gene family
AT1G69120 AGL7, AP1 K-box region and MADS-box transcription factor family protein 0.02 Gene family
AT2G03710 AGL3, SEP4 K-box region and MADS-box transcription factor family protein 0.04 Gene family
AT2G14210 ANR1, AGL44 AGAMOUS-like 44 0.05 Gene family
AT2G22540 SVP, AGL22 K-box region and MADS-box transcription factor family protein 0.03 Gene family
AT3G02310 AGL4, SEP2 K-box region and MADS-box transcription factor family protein 0.03 Gene family
AT3G57230 AGL16 AGAMOUS-like 16 0.03 Gene family
AT3G58780 AGL1, SHP1 K-box region and MADS-box transcription factor family protein 0.02 Gene family
AT4G24540 AGL24 AGAMOUS-like 24 0.03 Gene family
AT5G15800 AGL2, SEP1 K-box region and MADS-box transcription factor family protein 0.04 Gene family
AT5G60910 AGL8, FUL AGAMOUS-like 8 0.08 Gene family
AT5G62165 AGL42 AGAMOUS-like 42 0.06 Gene family
Cre11.g467577 No alias No description available 0.01 Gene family
GSVIVT01018450001 No alias 27.3.24 RNA.regulation of transcription.MADS box... 0.02 Gene family
GSVIVT01019883001 No alias 27.3.24 RNA.regulation of transcription.MADS box... 0.02 Gene family
GSVIVT01021303001 No alias 33.99 development.unspecified Floral homeotic gene... 0.02 Gene family
LOC_Os01g10504 Os01g0201700 33.99 development.unspecified Floral homeotic gene... 0.02 Gene family
LOC_Os02g45770 Os02g0682200 27.3.24 RNA.regulation of transcription.MADS box... 0.03 Gene family
LOC_Os03g11614 Os03g0215400 33.99 development.unspecified Encodes a MADS box... 0.02 Gene family
LOC_Os04g49150 Os04g0580700 27.3.24 RNA.regulation of transcription.MADS box... 0.03 Gene family
LOC_Os05g11380 No alias 33.99 development.unspecified Floral homeotic gene... 0.03 Gene family
LOC_Os05g11414 Os05g0203800 33.99 development.unspecified Floral homeotic gene... 0.01 Gene family
LOC_Os06g06750 Os06g0162800 27.3.24 RNA.regulation of transcription.MADS box... 0.02 Gene family
LOC_Os07g41370 Os07g0605200 33.99 development.unspecified MADS box gene negatively... 0.02 Gene family
LOC_Os08g41950 Os08g0531700 27.3.24 RNA.regulation of transcription.MADS box... 0.02 Gene family
LOC_Os12g31748 Os12g0501700 33.99 development.unspecified MADS box gene negatively... 0.02 Gene family
MA_9310518g0010 No alias No description available 0.02 Gene family
Solyc03g019710.3.1 Solyc03g019710.3 No description available 0.03 Gene family
Solyc03g114830.3.1 Solyc03g114830.3 33.99 development.unspecified MADS box gene negatively... 0.02 Gene family
Solyc10g017630.2.1 Solyc10g017630.2 No description available 0.06 Gene family
Solyc11g010570.2.1 Solyc11g010570.2 33.99 development.unspecified Encodes a nuclear protein... 0.03 Gene family
Solyc12g087830.2.1 Solyc12g087830.2 27.3.24 RNA.regulation of transcription.MADS box... 0.05 Gene family
Zm00001d013259 GRMZM2G553379 33.99 development.unspecified Floral homeotic gene... 0.02 Gene family
Zm00001d017614 GRMZM2G160565 27.3.24 RNA.regulation of transcription.MADS box... 0.02 Gene family
Zm00001d018667 GRMZM2G072582 33.99 development.unspecified MADS box gene negatively... 0.06 Gene family
Zm00001d022088 GRMZM2G147716 33.99 development.unspecified Floral homeotic gene... 0.03 Gene family
Zm00001d023955 GRMZM2G010669 33.99 development.unspecified One of two genes (SHP1 and... 0.02 Gene family
Zm00001d028217 GRMZM2G032070,... 33.99 development.unspecified MADS-box protein, binds K... 0.03 Gene family
Zm00001d041781 GRMZM2G160687 33.99 development.unspecified AGAMOUS [AG]-like MADS box... 0.02 Gene family
Zm00001d042315 GRMZM2G171650 27.3.24 RNA.regulation of transcription.MADS box... 0.03 Gene family
Zm00001d047355 GRMZM2G161666 27.3.24 RNA.regulation of transcription.MADS box... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan
CC GO:0005634 nucleus IEA InterProScan
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
IPR002487 TF_Kbox 91 170
No external refs found!