AMTR_s00078p00161460 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00078.147

Description : DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica


Gene families : OG_01_0005822 (Archaeplastida) Phylogenetic Tree(s): OG_01_0005822_tree ,
OG_02_0008168 (LandPlants) Phylogenetic Tree(s): OG_02_0008168_tree ,
OG_03_0009649 (SeedPlants) Phylogenetic Tree(s): OG_03_0009649_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00078p00161460
Cluster HCCA: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
AT4G09730 RH39 RH39 0.07 Archaeplastida
Cpa|evm.model.tig00020961.8 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.02 Archaeplastida
Cre01.g033832 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.02 Archaeplastida
GSVIVT01013702001 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.04 Archaeplastida
Gb_33379 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.06 Archaeplastida
MA_10427047g0010 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.06 Archaeplastida
MA_12327g0010 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.06 Archaeplastida
Mp5g09580.1 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.03 Archaeplastida
Pp3c22_7840V3.1 No alias RH39 0.03 Archaeplastida
Solyc12g056740.2.1 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.1 Archaeplastida
Zm00001e029916_P001 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.08 Archaeplastida
AT4G09730 RH39 RH39 0.06 LandPlants
GSVIVT01013702001 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.04 LandPlants
Gb_33379 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.05 LandPlants
MA_12327g0010 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.04 LandPlants
Mp5g09580.1 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.02 LandPlants
Pp3c22_7840V3.1 No alias RH39 0.02 LandPlants
Solyc12g056740.2.1 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.09 LandPlants
Zm00001e029916_P001 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.07 LandPlants
AT4G09730 RH39 RH39 0.06 SeedPlants
GSVIVT01013702001 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.03 SeedPlants
Gb_33379 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.05 SeedPlants
MA_12327g0010 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.04 SeedPlants
Solyc12g056740.2.1 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.09 SeedPlants
Zm00001e029916_P001 No alias DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa... 0.07 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 236 291
IPR011545 DEAD/DEAH_box_helicase_dom 132 232
IPR001650 Helicase_C 361 438
No external refs found!