Zm00001d017751 (GRMZM2G028605, GRMZM2G325019)

Aliases : GRMZM2G028605, GRMZM2G325019

Description : 35.1.5 not ontology.pentatricopeptide (PPR) repeat-containing protein Encodes a protein that promotes splicing of type II introns. otp51 mutants fail to splice intron 2 of plastid ycf3 transcripts, a factor required for the assembly of Photosystem I. Therefore, homozygous otp51 mutants have profound photosynthetic defects and can only survive in sucrose-supplemented in vitro cultures under low light conditions. OTP51 may also be involved in splicing several other transcripts and precursor forms of the trnL, trnG, trnI, and trnA transcripts also accumulate in otp51 mutants. Although OTP51 shares some homology with DNA endonucleases, it lacks key catalytic residues suggesting that it does not participate in DNA cleavage. ORGANELLE TRANSCRIPT PROCESSING 51 (OTP51)

Gene families : OG_01_0009061 (Gene family) Phylogenetic Tree(s): OG0009061_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR network (cutoff 100): Zm00001d017751
Cluster HCCA cluster: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AT2G15820 OTP51 endonucleases 0.07 Gene family
GSVIVT01031785001 No alias 35.1.5 not ontology.pentatricopeptide (PPR)... 0.02 Gene family
LOC_Os02g47360 Os02g0702000 35.1.5 not ontology.pentatricopeptide (PPR)... 0.12 Gene family
Smo438810 PACid_15401802 35.1.5 not ontology.pentatricopeptide (PPR)... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0004519 endonuclease activity IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 507 532
IPR002885 Pentatricopeptide_repeat 469 497
IPR002885 Pentatricopeptide_repeat 184 206
IPR002885 Pentatricopeptide_repeat 363 408
IPR004860 LAGLIDADG_2 570 736
No external refs found!