AMTR_s00078p00115450 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00078.88

Description : RNA biosynthesis.transcriptional activation.B3 superfamily.REM transcription factor

Gene families : OG_01_0000741 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000741_tree ,
OG_02_0000616 (LandPlants) Phylogenetic Tree(s): OG_02_0000616_tree ,
OG_03_0000481 (SeedPlants) Phylogenetic Tree(s): OG_03_0000481_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00078p00115450
Cluster	HCCA: Cluster_179

Target	Alias	Description	ECC score	Gene Family Method
AT5G42700	No alias	AP2/B3-like transcriptional factor family protein	0.03	Archaeplastida
AT5G58280	No alias	AP2/B3-like transcriptional factor family protein	0.03	Archaeplastida
GSVIVT01022143001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
Gb_35990	No alias	transcription factor (REM)	0.03	Archaeplastida
LOC_Os03g08620.1	No alias	transcription factor (REM)	0.04	Archaeplastida
LOC_Os05g40280.1	No alias	transcription factor (REM)	0.03	Archaeplastida
MA_10430774g0010	No alias	No annotation	0.04	Archaeplastida
MA_10433064g0010	No alias	transcription factor (REM)	0.02	Archaeplastida
Mp2g08790.1	No alias	transcription factor (REM)	0.03	Archaeplastida
Pp3c2_5990V3.1	No alias	AP2/B3-like transcriptional factor family protein	0.02	Archaeplastida
Solyc04g079130.2.1	No alias	transcription factor (REM)	0.04	Archaeplastida
Solyc06g007530.2.1	No alias	transcription factor (REM)	0.02	Archaeplastida
Solyc06g034140.3.1	No alias	transcription factor (REM)	0.05	Archaeplastida
Zm00001e000624_P003	No alias	transcription factor (REM)	0.03	Archaeplastida
Zm00001e020584_P001	No alias	transcription factor (REM)	0.03	Archaeplastida
Zm00001e040028_P004	No alias	transcription factor (REM)	0.05	Archaeplastida
MA_10430774g0010	No alias	No annotation	0.03	LandPlants
Solyc03g007140.3.1	No alias	B3 domain-containing protein Os01g0905400 OS=Oryza...	0.02	LandPlants
MA_10430774g0010	No alias	No annotation	0.03	SeedPlants
Solyc03g007140.3.1	No alias	B3 domain-containing protein Os01g0905400 OS=Oryza...	0.02	SeedPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	288	380
IPR003340	B3_DNA-bd	40	118

External Links

No external refs found!