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  5. AMTR_s00078p00108880

AMTR_s00078p00108880 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00078.80

No description available


Gene families : OG_01_0002233 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002233_tree ,
OG_02_0002168 (LandPlants) Phylogenetic Tree(s): OG_02_0002168_tree ,
OG_03_0001805 (SeedPlants) Phylogenetic Tree(s): OG_03_0001805_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00078p00108880
Cluster HCCA: Cluster_267

Target Alias Description ECC score Gene Family Method Actions
AT1G06380 No alias Ribosomal protein L1p/L10e family 0.03 Archaeplastida
AT3G58660 No alias Ribosomal protein L1p/L10e family 0.02 Archaeplastida
Gb_31610 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_550291g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_9529545g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp1g11260.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c12_11430V3.1 No alias Ribosomal protein L1p/L10e family 0.03 Archaeplastida
Solyc04g008790.1.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e026491_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e032390_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
AT1G06380 No alias Ribosomal protein L1p/L10e family 0.02 LandPlants
AT3G58660 No alias Ribosomal protein L1p/L10e family 0.02 LandPlants
Gb_31610 No alias no hits & (original description: none) 0.03 LandPlants
MA_9529545g0010 No alias no hits & (original description: none) 0.02 LandPlants
Mp1g11260.1 No alias no hits & (original description: none) 0.03 LandPlants
Pp3c12_11430V3.1 No alias Ribosomal protein L1p/L10e family 0.03 LandPlants
Solyc04g008790.1.1 No alias no hits & (original description: none) 0.05 LandPlants
Zm00001e026491_P001 No alias no hits & (original description: none) 0.03 LandPlants
AT1G06380 No alias Ribosomal protein L1p/L10e family 0.02 SeedPlants
AT3G58660 No alias Ribosomal protein L1p/L10e family 0.02 SeedPlants
Gb_31610 No alias no hits & (original description: none) 0.03 SeedPlants
LOC_Os05g48422.1 No alias no hits & (original description: none) 0.02 SeedPlants
MA_9529545g0010 No alias no hits & (original description: none) 0.02 SeedPlants
Solyc04g008790.1.1 No alias no hits & (original description: none) 0.05 SeedPlants
Zm00001e026491_P001 No alias no hits & (original description: none) 0.04 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
CC GO:0015934 large ribosomal subunit IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002143 Ribosomal_L1 28 244
No external refs found!