LOC_Os08g09270.1


Description : plastidial RNA processing factor (PPR287)


Gene families : OG_01_0008036 (Archaeplastida) Phylogenetic Tree(s): OG_01_0008036_tree ,
OG_02_0007862 (LandPlants) Phylogenetic Tree(s): OG_02_0007862_tree ,
OG_03_0010058 (SeedPlants) Phylogenetic Tree(s): OG_03_0010058_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g09270.1
Cluster HCCA: Cluster_311

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00092p00083700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g59040... 0.03 Archaeplastida
AT3G59040 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.17 Archaeplastida
GSVIVT01020809001 No alias Pentatricopeptide repeat-containing protein At3g59040... 0.14 Archaeplastida
Gb_12237 No alias plastidial RNA processing factor (PPR287) 0.03 Archaeplastida
MA_10437236g0010 No alias plastidial RNA processing factor (PPR287) 0.04 Archaeplastida
Mp6g14500.1 No alias plastidial RNA processing factor (PPR287) 0.12 Archaeplastida
Pp3c26_11100V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.14 Archaeplastida
Smo448320 No alias Pentatricopeptide repeat-containing protein At3g59040... 0.07 Archaeplastida
Solyc07g043600.4.1 No alias plastidial RNA processing factor (PPR287) 0.12 Archaeplastida
Zm00001e039973_P002 No alias plastidial RNA processing factor (PPR287) 0.09 Archaeplastida
AMTR_s00092p00083700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g59040... 0.03 LandPlants
AT3G59040 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.17 LandPlants
GSVIVT01020809001 No alias Pentatricopeptide repeat-containing protein At3g59040... 0.13 LandPlants
Gb_12237 No alias plastidial RNA processing factor (PPR287) 0.03 LandPlants
MA_10437236g0010 No alias plastidial RNA processing factor (PPR287) 0.03 LandPlants
Mp6g14500.1 No alias plastidial RNA processing factor (PPR287) 0.12 LandPlants
Pp3c26_11100V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.14 LandPlants
Smo448320 No alias Pentatricopeptide repeat-containing protein At3g59040... 0.06 LandPlants
Solyc07g043600.4.1 No alias plastidial RNA processing factor (PPR287) 0.11 LandPlants
Zm00001e039973_P002 No alias plastidial RNA processing factor (PPR287) 0.08 LandPlants
AMTR_s00092p00083700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g59040... 0.02 SeedPlants
AT3G59040 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.16 SeedPlants
GSVIVT01020809001 No alias Pentatricopeptide repeat-containing protein At3g59040... 0.14 SeedPlants
Gb_12237 No alias plastidial RNA processing factor (PPR287) 0.03 SeedPlants
MA_10437236g0010 No alias plastidial RNA processing factor (PPR287) 0.03 SeedPlants
Solyc07g043600.4.1 No alias plastidial RNA processing factor (PPR287) 0.11 SeedPlants
Zm00001e039973_P002 No alias plastidial RNA processing factor (PPR287) 0.08 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 374 432
IPR002885 Pentatricopeptide_repeat 147 172
IPR002885 Pentatricopeptide_repeat 459 487
IPR002885 Pentatricopeptide_repeat 249 292
IPR002885 Pentatricopeptide_repeat 315 363
IPR002885 Pentatricopeptide_repeat 175 222
No external refs found!