LOC_Os08g09100.1


Description : mRNA-binding regulatory factor (RBP45/47)


Gene families : OG_01_0000444 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000444_tree ,
OG_02_0000471 (LandPlants) Phylogenetic Tree(s): OG_02_0000471_tree ,
OG_03_0000318 (SeedPlants) Phylogenetic Tree(s): OG_03_0000318_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g09100.1
Cluster HCCA: Cluster_347

Target Alias Description ECC score Gene Family Method Actions
AT1G47500 ATRBP47C', RBP47C' RNA-binding protein 47C' 0.06 Archaeplastida
GSVIVT01025280001 No alias Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana 0.05 Archaeplastida
MA_10433182g0010 No alias Polyadenylate-binding protein RBP47C OS=Arabidopsis... 0.03 Archaeplastida
Pp3c12_10910V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Archaeplastida
Pp3c12_10960V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Archaeplastida
Solyc10g005260.3.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.03 Archaeplastida
Zm00001e012505_P001 No alias mRNA-binding regulatory factor (RBP45/47) 0.05 Archaeplastida
AT1G47500 ATRBP47C', RBP47C' RNA-binding protein 47C' 0.06 LandPlants
AT4G27000 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 LandPlants
GSVIVT01025280001 No alias Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana 0.05 LandPlants
Pp3c12_10910V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 LandPlants
Pp3c12_10960V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 LandPlants
Pp3c4_13300V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.01 LandPlants
Solyc10g005260.3.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.03 LandPlants
Zm00001e012505_P001 No alias mRNA-binding regulatory factor (RBP45/47) 0.05 LandPlants
AMTR_s00062p00161920 evm_27.TU.AmTr_v1... Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana 0.01 SeedPlants
AT1G47500 ATRBP47C', RBP47C' RNA-binding protein 47C' 0.06 SeedPlants
AT4G27000 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 SeedPlants
GSVIVT01025280001 No alias Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana 0.05 SeedPlants
Solyc10g005260.3.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.03 SeedPlants
Zm00001e012505_P001 No alias mRNA-binding regulatory factor (RBP45/47) 0.05 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000504 RRM_dom 291 354
IPR000504 RRM_dom 97 163
IPR000504 RRM_dom 187 257
No external refs found!