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  5. Aev_g01559

Aev_g01559 (SCD1)


Aliases : SCD1

Description : component *(SCD1)of post-Golgi trafficking SCD complex & original description: none


Gene families : OG0004472 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004472_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aev_g01559

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00104p00054580 SCD1,... Vesicle trafficking.endomembrane trafficking.post-Golgi... 0.03 OrthoFinder output from all 47 species
Ala_g27246 SCD1 component *(SCD1)of post-Golgi trafficking SCD complex &... 0.04 OrthoFinder output from all 47 species
Als_g05136 SCD1 component *(SCD1)of post-Golgi trafficking SCD complex &... 0.04 OrthoFinder output from all 47 species
Aob_g10698 SCD1 component *(SCD1)of post-Golgi trafficking SCD complex &... 0.02 OrthoFinder output from all 47 species
Azfi_s1726.g106181 SCD1 component *(SCD1)of post-Golgi trafficking SCD complex &... 0.04 OrthoFinder output from all 47 species
Ceric.26G004000.1 SCD1, Ceric.26G004000 component *(SCD1)of post-Golgi trafficking SCD complex &... 0.02 OrthoFinder output from all 47 species
Dcu_g06506 SCD1 component *(SCD1)of post-Golgi trafficking SCD complex &... 0.02 OrthoFinder output from all 47 species
LOC_Os01g39380.1 SCD1, LOC_Os01g39380 SCD1 component of post-Golgi trafficking SCD complex 0.02 OrthoFinder output from all 47 species
Lfl_g05730 SCD1 component *(SCD1)of post-Golgi trafficking SCD complex &... 0.03 OrthoFinder output from all 47 species
Mp5g20500.1 SCD1 SCD1 component of post-Golgi trafficking SCD complex 0.02 OrthoFinder output from all 47 species
Smo118822 SCD1 Vesicle trafficking.endomembrane trafficking.post-Golgi... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR005113 uDENN_dom 38 106
IPR001680 WD40_repeat 955 991
IPR001680 WD40_repeat 1079 1114
IPR001680 WD40_repeat 918 950
IPR001680 WD40_repeat 1038 1073
IPR001680 WD40_repeat 861 908
IPR001194 cDENN_dom 126 308
No external refs found!