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  5. LOC_Os08g05880.1

LOC_Os08g05880.1


Description : SSU processome assembly factor (IMP4)


Gene families : OG_01_0006180 (Archaeplastida) Phylogenetic Tree(s): OG_01_0006180_tree ,
OG_02_0007507 (LandPlants) Phylogenetic Tree(s): OG_02_0007507_tree ,
OG_03_0010795 (SeedPlants) Phylogenetic Tree(s): OG_03_0010795_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g05880.1
Cluster HCCA: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00101p00134540 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 Archaeplastida
AT1G63780 IMP4 Ribosomal RNA processing Brix domain protein 0.02 Archaeplastida
Cpa|evm.model.tig00020848.22 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 Archaeplastida
Cre10.g454100 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 Archaeplastida
GSVIVT01000834001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 Archaeplastida
Gb_23948 No alias SSU processome assembly factor (IMP4) 0.04 Archaeplastida
Mp2g04740.1 No alias SSU processome assembly factor (IMP4) 0.08 Archaeplastida
Solyc01g007250.4.1 No alias SSU processome assembly factor (IMP4) 0.04 Archaeplastida
Zm00001e013140_P001 No alias SSU processome assembly factor (IMP4) 0.05 Archaeplastida
AMTR_s00101p00134540 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 LandPlants
GSVIVT01000834001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 LandPlants
Gb_23948 No alias SSU processome assembly factor (IMP4) 0.04 LandPlants
Mp2g04740.1 No alias SSU processome assembly factor (IMP4) 0.07 LandPlants
Solyc01g007250.4.1 No alias SSU processome assembly factor (IMP4) 0.04 LandPlants
Zm00001e013140_P001 No alias SSU processome assembly factor (IMP4) 0.05 LandPlants
AMTR_s00101p00134540 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 SeedPlants
GSVIVT01000834001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 SeedPlants
Gb_23948 No alias SSU processome assembly factor (IMP4) 0.04 SeedPlants
Solyc01g007250.4.1 No alias SSU processome assembly factor (IMP4) 0.04 SeedPlants
Zm00001e013140_P001 No alias SSU processome assembly factor (IMP4) 0.04 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007109 Brix 90 260
No external refs found!