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  5. LOC_Os08g03676.1

LOC_Os08g03676.1


Description : Pentatricopeptide repeat-containing protein At1g53600, mitochondrial OS=Arabidopsis thaliana (sp|q9c8l6|ppr80_arath : 518.0)


Gene families : OG_01_0012283 (Archaeplastida) Phylogenetic Tree(s): OG_01_0012283_tree ,
OG_02_0011025 (LandPlants) Phylogenetic Tree(s): OG_02_0011025_tree ,
OG_03_0006275 (SeedPlants) Phylogenetic Tree(s): OG_03_0006275_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g03676.1
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01008664001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.05 Archaeplastida
GSVIVT01037506001 No alias Pentatricopeptide repeat-containing protein At1g53600,... 0.04 Archaeplastida
GSVIVT01037506001 No alias Pentatricopeptide repeat-containing protein At1g53600,... 0.03 LandPlants
Solyc02g088470.1.1 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.04 LandPlants
AT1G56690 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 SeedPlants
Gb_06572 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.09 SeedPlants
Gb_15262 No alias RNA editing factor (MEF9) 0.07 SeedPlants
LOC_Os11g24530.1 No alias Pentatricopeptide repeat-containing protein At2g35030,... 0.06 SeedPlants
MA_102181g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.11 SeedPlants
Solyc06g064600.1.1 No alias Pentatricopeptide repeat-containing protein At1g56690,... 0.12 SeedPlants
Solyc12g011400.3.1 No alias Pentatricopeptide repeat-containing protein At1g53600,... 0.11 SeedPlants
Zm00001e001494_P001 No alias no hits & (original description: none) 0.12 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 301 327
IPR002885 Pentatricopeptide_repeat 359 385
IPR002885 Pentatricopeptide_repeat 328 356
IPR002885 Pentatricopeptide_repeat 168 193
IPR002885 Pentatricopeptide_repeat 102 129
IPR002885 Pentatricopeptide_repeat 563 590
IPR002885 Pentatricopeptide_repeat 132 157
IPR002885 Pentatricopeptide_repeat 462 483
IPR002885 Pentatricopeptide_repeat 70 99
IPR002885 Pentatricopeptide_repeat 42 68
IPR002885 Pentatricopeptide_repeat 387 435
IPR002885 Pentatricopeptide_repeat 224 272
IPR002885 Pentatricopeptide_repeat 488 537
IPR002885 Pentatricopeptide_repeat 194 221
No external refs found!