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  5. LOC_Os08g01700.1

LOC_Os08g01700.1


Description : transcription factor (bHLH)


Gene families : OG_01_0000092 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000092_tree ,
OG_02_0000040 (LandPlants) Phylogenetic Tree(s): OG_02_0000040_tree ,
OG_03_0000031 (SeedPlants) Phylogenetic Tree(s): OG_03_0000031_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g01700.1
Cluster HCCA: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
AT1G09530 PIF3, POC1, PAP3 phytochrome interacting factor 3 0.03 Archaeplastida
AT1G27740 RSL4 root hair defective 6-like 4 0.04 Archaeplastida
AT1G66470 RHD6 ROOT HAIR DEFECTIVE6 0.04 Archaeplastida
AT1G68240 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
AT2G46970 PIL1 phytochrome interacting factor 3-like 1 0.04 Archaeplastida
AT3G50330 HEC2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 Archaeplastida
AT4G00120 GT140, IND1, IND, EDA33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Archaeplastida
AT5G01305 No alias No description available 0.02 Archaeplastida
AT5G37800 ATRSL1, RSL1 RHD SIX-LIKE 1 0.04 Archaeplastida
AT5G43175 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
AT5G67060 HEC1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Archaeplastida
LOC_Os05g46370.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
LOC_Os12g41650.2 No alias transcription factor (bHLH). PIF red/far-red light... 0.02 Archaeplastida
MA_100071g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10156436g0010 No alias transcription factor (bHLH) 0.03 Archaeplastida
MA_29441g0010 No alias transcription factor (bHLH) 0.02 Archaeplastida
MA_83500g0010 No alias transcription factor (bHLH) 0.04 Archaeplastida
Mp5g09710.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
Mp6g21470.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Pp3c10_19020V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
Pp3c14_20740V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Archaeplastida
Pp3c16_21590V3.1 No alias ROOT HAIR DEFECTIVE 6-LIKE 2 0.03 Archaeplastida
Pp3c25_13740V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Archaeplastida
Smo405220 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.01 Archaeplastida
Solyc01g107140.3.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
Solyc02g091440.2.1 No alias transcription factor (bHLH) 0.08 Archaeplastida
Solyc03g044460.1.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Solyc03g121240.1.1 No alias transcription factor (bHLH) 0.02 Archaeplastida
Solyc04g077960.1.1 No alias transcription factor (bHLH) 0.06 Archaeplastida
Solyc09g005070.1.1 No alias transcription factor (bHLH) 0.03 Archaeplastida
Solyc12g088380.1.1 No alias transcription factor (bHLH) 0.04 Archaeplastida
Zm00001e005046_P003 No alias transcription factor (bHLH). PIF red/far-red light... 0.02 Archaeplastida
Zm00001e015610_P001 No alias transcription factor (bHLH) 0.04 Archaeplastida
Zm00001e019392_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e020012_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e021883_P001 No alias transcription factor (bHLH) 0.03 Archaeplastida
Zm00001e027758_P002 No alias transcription factor (bHLH) 0.02 Archaeplastida
Zm00001e029147_P001 No alias transcription factor (bHLH) 0.02 Archaeplastida
AMTR_s00008p00265010 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.01 LandPlants
AMTR_s00024p00250370 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.02 LandPlants
AMTR_s00106p00127480 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.01 LandPlants
AT1G09530 PIF3, POC1, PAP3 phytochrome interacting factor 3 0.02 LandPlants
AT1G27740 RSL4 root hair defective 6-like 4 0.03 LandPlants
AT1G66470 RHD6 ROOT HAIR DEFECTIVE6 0.03 LandPlants
AT1G68240 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 LandPlants
AT3G50330 HEC2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 LandPlants
AT4G00120 GT140, IND1, IND, EDA33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 LandPlants
AT5G01305 No alias No description available 0.02 LandPlants
AT5G37800 ATRSL1, RSL1 RHD SIX-LIKE 1 0.03 LandPlants
AT5G67060 HEC1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 LandPlants
GSVIVT01028238001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.02 LandPlants
Gb_27869 No alias transcription factor (bHLH) 0.02 LandPlants
Gb_30839 No alias transcription factor (bHLH) 0.02 LandPlants
LOC_Os01g02110.1 No alias transcription factor (bHLH) 0.02 LandPlants
LOC_Os03g10770.1 No alias transcription factor (bHLH) 0.03 LandPlants
LOC_Os11g41640.1 No alias transcription factor (bHLH) 0.03 LandPlants
LOC_Os12g39850.1 No alias transcription factor (bHLH) 0.03 LandPlants
MA_100071g0010 No alias no hits & (original description: none) 0.02 LandPlants
MA_10156436g0010 No alias transcription factor (bHLH) 0.03 LandPlants
MA_306658g0010 No alias transcription factor (bHLH) 0.02 LandPlants
MA_83500g0010 No alias transcription factor (bHLH) 0.02 LandPlants
MA_88831g0010 No alias transcription factor (bHLH) 0.02 LandPlants
Mp6g21470.1 No alias transcription factor (bHLH) 0.02 LandPlants
Pp3c1_40040V3.1 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.01 LandPlants
Smo405220 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.01 LandPlants
Solyc01g107140.3.1 No alias transcription factor (bHLH) 0.05 LandPlants
Solyc02g090950.1.1 No alias transcription factor (bHLH) 0.01 LandPlants
Solyc02g091440.2.1 No alias transcription factor (bHLH) 0.07 LandPlants
Solyc03g044460.1.1 No alias transcription factor (bHLH) 0.02 LandPlants
Solyc03g121240.1.1 No alias transcription factor (bHLH) 0.02 LandPlants
Solyc04g077960.1.1 No alias transcription factor (bHLH) 0.06 LandPlants
Solyc06g062460.3.1 No alias transcription factor (bHLH) 0.01 LandPlants
Solyc06g069600.3.1 No alias transcription factor (bHLH) 0.02 LandPlants
Solyc09g005070.1.1 No alias transcription factor (bHLH) 0.02 LandPlants
Solyc12g088380.1.1 No alias transcription factor (bHLH) 0.05 LandPlants
Solyc12g088790.3.1 No alias transcription factor (bHLH) 0.01 LandPlants
Zm00001e015610_P001 No alias transcription factor (bHLH) 0.03 LandPlants
Zm00001e019392_P001 No alias transcription factor (bHLH) 0.02 LandPlants
Zm00001e020012_P001 No alias transcription factor (bHLH) 0.02 LandPlants
Zm00001e021883_P001 No alias transcription factor (bHLH) 0.03 LandPlants
Zm00001e025656_P001 No alias transcription factor (bHLH) 0.03 LandPlants
Zm00001e027758_P002 No alias transcription factor (bHLH) 0.02 LandPlants
Zm00001e029147_P001 No alias transcription factor (bHLH) 0.02 LandPlants
Zm00001e032280_P001 No alias transcription factor (bHLH) 0.01 LandPlants
Zm00001e035422_P001 No alias transcription factor (bHLH) 0.02 LandPlants
Zm00001e041668_P001 No alias transcription factor (bHLH) 0.02 LandPlants
AMTR_s00008p00265010 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.01 SeedPlants
AT1G09530 PIF3, POC1, PAP3 phytochrome interacting factor 3 0.02 SeedPlants
AT3G50330 HEC2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 SeedPlants
AT5G01305 No alias No description available 0.02 SeedPlants
AT5G67060 HEC1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 SeedPlants
GSVIVT01028238001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.02 SeedPlants
MA_100071g0010 No alias no hits & (original description: none) 0.01 SeedPlants
MA_10156436g0010 No alias transcription factor (bHLH) 0.02 SeedPlants
MA_83500g0010 No alias transcription factor (bHLH) 0.02 SeedPlants
Solyc01g107140.3.1 No alias transcription factor (bHLH) 0.01 SeedPlants
Solyc02g091440.2.1 No alias transcription factor (bHLH) 0.03 SeedPlants
Solyc03g121240.1.1 No alias transcription factor (bHLH) 0.01 SeedPlants
Solyc04g077960.1.1 No alias transcription factor (bHLH) 0.02 SeedPlants
Solyc06g062460.3.1 No alias transcription factor (bHLH) 0.01 SeedPlants
Solyc09g005070.1.1 No alias transcription factor (bHLH) 0.02 SeedPlants
Solyc12g088790.3.1 No alias transcription factor (bHLH) 0.01 SeedPlants
Zm00001e015610_P001 No alias transcription factor (bHLH) 0.01 SeedPlants
Zm00001e019392_P001 No alias transcription factor (bHLH) 0.02 SeedPlants
Zm00001e020012_P001 No alias transcription factor (bHLH) 0.02 SeedPlants
Zm00001e021883_P001 No alias transcription factor (bHLH) 0.02 SeedPlants
Zm00001e025656_P001 No alias transcription factor (bHLH) 0.01 SeedPlants
Zm00001e029147_P001 No alias transcription factor (bHLH) 0.02 SeedPlants
Zm00001e032280_P001 No alias transcription factor (bHLH) 0.01 SeedPlants
Zm00001e035422_P001 No alias transcription factor (bHLH) 0.02 SeedPlants
Zm00001e041668_P001 No alias transcription factor (bHLH) 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR011598 bHLH_dom 173 212
No external refs found!