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  5. Dac_g25407

Dac_g25407


Description : component *(uL1) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0001297 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001297_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dac_g25407
Cluster HCCA: Cluster_94

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00167280 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
AMTR_s00053p00163590 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
AT1G08360 No alias Ribosomal protein L1p/L10e family 0.09 OrthoFinder output from all 47 species
AT2G27530 PGY1 Ribosomal protein L1p/L10e family 0.1 OrthoFinder output from all 47 species
AT5G22440 No alias Ribosomal protein L1p/L10e family 0.02 OrthoFinder output from all 47 species
Adi_g012505 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Adi_g053018 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ala_g18263 No alias component *(uL1) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Ala_g38886 No alias component *(uL1) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Aop_g02409 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Azfi_s0022.g016098 No alias component *(uL1) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Cba_g66373 No alias component *(uL1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ceric.18G006900.1 Ceric.18G006900 component *(uL1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ceric.34G055700.1 Ceric.34G055700 component *(uL1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020697.31 No alias 60S ribosomal protein L10a OS=Oryza sativa subsp. japonica 0.06 OrthoFinder output from all 47 species
Cre02.g101350 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 OrthoFinder output from all 47 species
Dac_g03072 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Dcu_g03488 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
GSVIVT01033841001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 OrthoFinder output from all 47 species
Gb_13744 No alias component RPL10a of LSU proteome component 0.03 OrthoFinder output from all 47 species
Gb_28506 No alias component RPL10a of LSU proteome component 0.1 OrthoFinder output from all 47 species
LOC_Os01g64090.1 LOC_Os01g64090 component RPL10a of LSU proteome component 0.08 OrthoFinder output from all 47 species
LOC_Os02g21660.1 LOC_Os02g21660 component RPL10a of LSU proteome component 0.12 OrthoFinder output from all 47 species
LOC_Os08g44380.1 LOC_Os08g44380 component RPL10a of LSU proteome component 0.04 OrthoFinder output from all 47 species
Lfl_g26241 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
MA_71921g0010 No alias component RPL10a of LSU proteome component 0.03 OrthoFinder output from all 47 species
Mp3g07870.1 No alias component RPL10a of LSU proteome component 0.11 OrthoFinder output from all 47 species
Msp_g00232 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Msp_g39894 PGY1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g04954 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Pp3c23_12730V3.1 Pp3c23_12730 Ribosomal protein L1p/L10e family 0.04 OrthoFinder output from all 47 species
Ppi_g34689 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g12736 No alias component *(uL1) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Sam_g26155 No alias component *(uL1) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Smo230302 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 OrthoFinder output from all 47 species
Solyc01g009520.4.1 Solyc01g009520 component RPL10a of LSU proteome component 0.09 OrthoFinder output from all 47 species
Solyc06g074300.4.1 Solyc06g074300 component RPL10a of LSU proteome component 0.11 OrthoFinder output from all 47 species
Solyc11g068420.2.1 Solyc11g068420 component RPL10a of LSU proteome component 0.08 OrthoFinder output from all 47 species
Spa_g08347 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Spa_g08353 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Spa_g53937 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Tin_g10501 PGY1 component *(uL1) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Tin_g39928 No alias component *(uL1) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Zm00001e003939_P002 Zm00001e003939 component RPL10a of LSU proteome component 0.02 OrthoFinder output from all 47 species
Zm00001e019205_P001 Zm00001e019205 component RPL10a of LSU proteome component 0.08 OrthoFinder output from all 47 species
Zm00001e022063_P001 Zm00001e022063 component RPL10a of LSU proteome component 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR028364 Ribosomal_L1/biogenesis 22 211
No external refs found!