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  5. LOC_Os08g01290.5

LOC_Os08g01290.5


Description : transcription factor (TUB)


Gene families : OG_01_0000335 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000335_tree ,
OG_02_0000295 (LandPlants) Phylogenetic Tree(s): OG_02_0000295_tree ,
OG_03_0000341 (SeedPlants) Phylogenetic Tree(s): OG_03_0000341_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os08g01290.5
Cluster HCCA: Cluster_276

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00040910 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.04 Archaeplastida
AMTR_s00057p00153680 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.02 Archaeplastida
AT1G25280 TLP10, AtTLP10 tubby like protein 10 0.03 Archaeplastida
AT3G06380 TLP9, ATTLP9 tubby-like protein 9 0.02 Archaeplastida
Cre12.g520650 No alias RNA biosynthesis.transcriptional activation.TUB... 0.02 Archaeplastida
GSVIVT01014191001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.04 Archaeplastida
GSVIVT01017810001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.03 Archaeplastida
GSVIVT01029701001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.02 Archaeplastida
Gb_22686 No alias transcription factor (TUB) 0.04 Archaeplastida
LOC_Os05g36190.1 No alias transcription factor (TUB) 0.04 Archaeplastida
LOC_Os12g06630.2 No alias transcription factor (TUB) 0.03 Archaeplastida
Pp3c20_2190V3.1 No alias tubby like protein 3 0.02 Archaeplastida
Pp3c24_19540V3.1 No alias tubby like protein 3 0.01 Archaeplastida
Pp3c8_18450V3.1 No alias tubby like protein 3 0.02 Archaeplastida
Smo83983 No alias RNA biosynthesis.transcriptional activation.TUB... 0.03 Archaeplastida
Solyc04g071750.4.1 No alias transcription factor (TUB) 0.04 Archaeplastida
Solyc10g046970.2.1 No alias transcription factor (TUB) 0.05 Archaeplastida
Zm00001e001672_P001 No alias transcription factor (TUB) 0.03 Archaeplastida
Zm00001e019166_P001 No alias transcription factor (TUB) 0.03 Archaeplastida
Zm00001e024284_P002 No alias transcription factor (TUB) 0.06 Archaeplastida
AMTR_s00040p00040910 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.03 LandPlants
AT1G25280 TLP10, AtTLP10 tubby like protein 10 0.02 LandPlants
GSVIVT01014191001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.02 LandPlants
GSVIVT01034528001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.02 LandPlants
Gb_22686 No alias transcription factor (TUB) 0.03 LandPlants
Gb_38151 No alias transcription factor (TUB) 0.02 LandPlants
Pp3c24_19540V3.1 No alias tubby like protein 3 0.01 LandPlants
Pp3c8_18450V3.1 No alias tubby like protein 3 0.02 LandPlants
Smo83983 No alias RNA biosynthesis.transcriptional activation.TUB... 0.02 LandPlants
Smo85745 No alias RNA biosynthesis.transcriptional activation.TUB... 0.01 LandPlants
Solyc04g071750.4.1 No alias transcription factor (TUB) 0.03 LandPlants
Solyc10g046970.2.1 No alias transcription factor (TUB) 0.03 LandPlants
Zm00001e001672_P001 No alias transcription factor (TUB) 0.03 LandPlants
Zm00001e019166_P001 No alias transcription factor (TUB) 0.03 LandPlants
Zm00001e020185_P004 No alias transcription factor (TUB) 0.01 LandPlants
Zm00001e024284_P002 No alias transcription factor (TUB) 0.06 LandPlants
AMTR_s00040p00040910 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.TUB... 0.03 SeedPlants
AT1G25280 TLP10, AtTLP10 tubby like protein 10 0.02 SeedPlants
GSVIVT01034528001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.02 SeedPlants
Solyc01g104670.3.1 No alias transcription factor (TUB) 0.01 SeedPlants
Solyc10g046970.2.1 No alias transcription factor (TUB) 0.02 SeedPlants
Zm00001e001672_P001 No alias transcription factor (TUB) 0.03 SeedPlants
Zm00001e019166_P001 No alias transcription factor (TUB) 0.02 SeedPlants
Zm00001e024284_P002 No alias transcription factor (TUB) 0.05 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001810 F-box_dom 59 111
IPR000007 Tubby_C 122 446
No external refs found!