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  5. LOC_Os07g48850.2

LOC_Os07g48850.2


Description : Pentatricopeptide repeat-containing protein At1g13040, mitochondrial OS=Arabidopsis thaliana (sp|q9sad9|ppr40_arath : 427.0)


Gene families : OG_01_0001265 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001265_tree ,
OG_02_0000728 (LandPlants) Phylogenetic Tree(s): OG_02_0000728_tree ,
OG_03_0007555 (SeedPlants) Phylogenetic Tree(s): OG_03_0007555_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g48850.2
Cluster HCCA: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00131p00098210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g13040,... 0.03 Archaeplastida
AMTR_s00144p00054940 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g40240,... 0.02 Archaeplastida
AMTR_s00153p00079500 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g56030,... 0.03 Archaeplastida
AT2G40240 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
Gb_33357 No alias Pentatricopeptide repeat-containing protein At2g40240,... 0.03 Archaeplastida
MA_863891g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_9347352g0010 No alias Pentatricopeptide repeat-containing protein At2g40240,... 0.02 Archaeplastida
Mp1g17150.1 No alias Pentatricopeptide repeat-containing protein At1g51965,... 0.05 Archaeplastida
Mp2g04070.1 No alias Pentatricopeptide repeat-containing protein At3g06920... 0.02 Archaeplastida
Mp2g13600.1 No alias Pentatricopeptide repeat-containing protein At1g06710,... 0.02 Archaeplastida
Mp4g20290.1 No alias Pentatricopeptide repeat-containing protein At3g06920... 0.05 Archaeplastida
Smo415658 No alias No description available 0.03 Archaeplastida
Smo80491 No alias Pentatricopeptide repeat-containing protein At1g62670,... 0.02 Archaeplastida
Smo88008 No alias Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica 0.02 Archaeplastida
Solyc03g095960.1.1 No alias Pentatricopeptide repeat-containing protein At2g40240,... 0.02 Archaeplastida
Zm00001e035905_P001 No alias Pentatricopeptide repeat-containing protein At1g13040,... 0.03 Archaeplastida
AMTR_s00131p00098210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g13040,... 0.02 LandPlants
AMTR_s00153p00079500 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g56030,... 0.02 LandPlants
AT1G13040 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 LandPlants
Gb_33357 No alias Pentatricopeptide repeat-containing protein At2g40240,... 0.03 LandPlants
MA_9347352g0010 No alias Pentatricopeptide repeat-containing protein At2g40240,... 0.02 LandPlants
Mp1g17150.1 No alias Pentatricopeptide repeat-containing protein At1g51965,... 0.04 LandPlants
Mp4g20290.1 No alias Pentatricopeptide repeat-containing protein At3g06920... 0.03 LandPlants
Pp3c3_2440V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 LandPlants
Smo415658 No alias No description available 0.02 LandPlants
Solyc03g095960.1.1 No alias Pentatricopeptide repeat-containing protein At2g40240,... 0.02 LandPlants
Zm00001e035905_P001 No alias Pentatricopeptide repeat-containing protein At1g13040,... 0.03 LandPlants
AMTR_s00131p00098210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g13040,... 0.02 SeedPlants
AT1G13040 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.05 SeedPlants
Zm00001e035905_P001 No alias Pentatricopeptide repeat-containing protein At1g13040,... 0.03 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 541 571
IPR002885 Pentatricopeptide_repeat 231 261
IPR002885 Pentatricopeptide_repeat 372 401
IPR002885 Pentatricopeptide_repeat 163 191
IPR002885 Pentatricopeptide_repeat 474 520
IPR002885 Pentatricopeptide_repeat 298 342
IPR002885 Pentatricopeptide_repeat 578 625
IPR002885 Pentatricopeptide_repeat 403 452
No external refs found!