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  5. Dac_g23614

Dac_g23614 (SDE3)


Aliases : SDE3

Description : not classified & original description: none


Gene families : OG0002062 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002062_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dac_g23614
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
Ceric.04G049000.1 Ceric.04G049000 not classified & original description: pacid=50632510... 0.06 OrthoFinder output from all 47 species
Ceric.04G049100.1 SDE3, Ceric.04G049100 not classified & original description: pacid=50630575... 0.07 OrthoFinder output from all 47 species
Ceric.04G049400.1 SDE3, Ceric.04G049400 not classified & original description: pacid=50631292... 0.04 OrthoFinder output from all 47 species
Dcu_g31859 SDE3 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Gb_08232 EMB2765 Regulator of nonsense transcripts 1 homolog... 0.05 OrthoFinder output from all 47 species
Mp5g14410.1 No alias Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Spa_g23408 SDE3 not classified & original description: none 0.12 OrthoFinder output from all 47 species
Spa_g56789 SDE3 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g44773 SDE3 not classified & original description: none 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0031167 rRNA methylation IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP HCCA
BP GO:0070475 rRNA base methylation IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR041679 DNA2/NAM7-like_C 22 87
No external refs found!