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  5. Aev_g00810

Aev_g00810


Description : ribosome biogenesis GTPase *(RgbA) & original description: none


Gene families : OG0006215 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006215_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aev_g00810
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00070p00106620 evm_27.TU.AmTr_v1... DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT4G02790 No alias GTP-binding family protein 0.02 OrthoFinder output from all 47 species
Ala_g05927 No alias ribosome biogenesis GTPase *(RgbA) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g10973 No alias ribosome biogenesis GTPase *(RgbA) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g15491 No alias ribosome biogenesis GTPase *(RgbA) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01011078001 No alias DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
LOC_Os05g35540.1 LOC_Os05g35540 DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Lfl_g26262 No alias ribosome biogenesis GTPase *(RgbA) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g02397 No alias ribosome biogenesis GTPase *(RgbA) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g38635 No alias ribosome biogenesis GTPase *(RgbA) & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g18345 No alias ribosome biogenesis GTPase *(RgbA) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008458 No alias ribosome biogenesis GTPase *(RgbA) & original... 0.04 OrthoFinder output from all 47 species
Solyc06g084270.3.1 Solyc06g084270 DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Spa_g51029 No alias ribosome biogenesis GTPase *(RgbA) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e031798_P004 Zm00001e031798 DAR GTPase 3, chloroplastic OS=Arabidopsis thaliana... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0004602 glutathione peroxidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004813 alanine-tRNA ligase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006419 alanyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR006073 GTP-bd 196 256
No external refs found!