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  5. Dac_g16736

Dac_g16736 (CRM3, HCF152)


Aliases : CRM3, HCF152

Description : plastidial transcript stability factor *(HCF152) & original description: none


Gene families : OG0001501 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001501_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dac_g16736

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00220910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g03100,... 0.04 OrthoFinder output from all 47 species
AT1G68980 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Dcu_g14031 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.05 OrthoFinder output from all 47 species
Ehy_g23058 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.03 OrthoFinder output from all 47 species
GSVIVT01012219001 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.03 OrthoFinder output from all 47 species
LOC_Os07g31310.1 LOC_Os07g31310 Pentatricopeptide repeat-containing protein At4g17616... 0.03 OrthoFinder output from all 47 species
Len_g11883 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.03 OrthoFinder output from all 47 species
MA_743669g0010 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.03 OrthoFinder output from all 47 species
MA_90791g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Mp1g13160.1 CRM3, HCF152 HCF152 plastidial RNA transcript stability factor 0.03 OrthoFinder output from all 47 species
Ore_g10706 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.03 OrthoFinder output from all 47 species
Tin_g24136 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 691 715
IPR002885 Pentatricopeptide_repeat 429 455
IPR002885 Pentatricopeptide_repeat 522 583
IPR002885 Pentatricopeptide_repeat 605 652
IPR002885 Pentatricopeptide_repeat 463 511
IPR002885 Pentatricopeptide_repeat 261 307
No external refs found!